Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq436 185 2e-41 seq150 185 2e-41 seq58 185 2e-41 seq575 179 8e-40 seq378 129 1e-24 seq1 122 2e-22 seq350 120 6e-22 seq43 93.3 9e-14 >seq436 Length=23449 Score = 185 bits (204), Expect = 2e-41 Identities = 187/241 (78%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 851 ACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 910 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || ||||| ||||||| || || || || || Sbjct 911 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 970 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || || | || || ||||||||| |||| Sbjct 971 GATTCCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTGTCCGAAGGCTCGA 1029 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 | ||||| ||||||||||| || |||| |||||| ||||| |||||||| || | |||| Sbjct 1030 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACA 1089 Query 283111 A 283111 | Sbjct 1090 A 1090 >seq150 Length=112013 Score = 185 bits (204), Expect = 2e-41 Identities = 181/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 82378 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 82437 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || || || ||||||| ||| || ||||| ||| Sbjct 82438 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 82497 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| | |||||| | ||||| Sbjct 82498 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCGAC 82556 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||||||||| ||||||| ||||| || || |||||||| || Sbjct 82557 ATCGAGTGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATCTT 82607 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 90893 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 90834 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || || || ||||||| ||| || ||||| ||| Sbjct 90833 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 90774 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||||| ||| | ||||| | |||||| | ||||| Sbjct 90773 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCGAC 90715 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| || || |||||||| Sbjct 90714 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 90667 >seq58 Length=197190 Score = 185 bits (204), Expect = 2e-41 Identities = 187/241 (78%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 84935 ACCACCACGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 84994 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || ||||| ||||||| || || || || || Sbjct 84995 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 85054 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || || | || || ||||||||| |||| Sbjct 85055 GATTCCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTGTCCGAAGGCTCGA 85113 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 | ||||| ||||||||||| || |||| |||||| ||||| |||||||| || | |||| Sbjct 85114 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACA 85173 Query 283111 A 283111 | Sbjct 85174 A 85174 >seq575 Length=11535 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 2015 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 1956 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || || || ||||||| ||| || ||||| ||| Sbjct 1955 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 1896 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||||| ||| | ||||| | |||||| | ||||| Sbjct 1895 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCGAC 1837 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| || || |||||||| Sbjct 1836 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 1789 >seq378 Length=32279 Score = 129 bits (142), Expect = 1e-24 Identities = 132/170 (78%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 169 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 110 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || || || ||||||| ||| || ||||| ||| Sbjct 109 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 50 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCG 283041 || ||||||||||| || ||||| ||| || ||| | ||||| | ||||| Sbjct 49 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATCGAGTCCG 1 >seq1 Length=655053 Score = 122 bits (134), Expect = 2e-22 Identities = 302/454 (67%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 273606 CTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTC 273665 ||||| | | ||| |||||||| |||||||| || | || || | ||| | || Sbjct 287315 CTCGGGATCTGCGTCGACCAACCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATC 287256 Query 273666 GGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTC 273725 || | || || || ||||| | |||||| | | | |||||||||| | ||| || Sbjct 287255 GGCAGGATCGGCACGTAATAGTGGGGCTCCACTGGGTACCCATCGTCGTCCACGTAGCTC 287196 Query 273726 AACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAA 273785 | || || ||||| || || | | ||||| | | ||| |||||| Sbjct 287195 AGCAGCGCGTCATCGTCCTCTGGAAACAGCAGACGCGTGTACTTCTGCAGCAACGTGAAG 287136 Query 273786 ATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCG 273845 || || | | ||| || ||||||||| || ||||| | || |||||||| ||| Sbjct 287135 ATATAGCGCGGACTNGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGTCCCGAC 287076 Query 273846 GGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTC 273905 || ||| | | |||||| |||||| || ||||| ||||| || || || ||| Sbjct 287075 GGATACAGCAANGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACAATCGTC 287016 Query 273906 CCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAA 273964 || || || ||||||||||||| || || |||| || || | | |||||| || Sbjct 287015 GAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACCAGCGAG 286957 Query 273965 CTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA-ATGCGGAATACAACACCTTCC 274023 ||| || ||||| || || |||||| || ||||| | | || | ||| |||||| | Sbjct 286956 CTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGA-ACAGCACCTTGC 286898 Query 274024 GCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||||||| ||||| ||| || || || || || Sbjct 286897 GCTGCGAGACCTTGAGCCCGTCGACCACGGACGG 286864 >seq350 Length=38155 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 12355 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAGG 12414 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 12415 TGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 12474 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 12475 TTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGAC 12534 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 12535 TTACCGGCACCGTT 12548 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 19331 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAGG 19390 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 19391 TGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 19450 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 19451 TTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGAC 19510 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 19511 TTACCGGCACCGTT 19524 >seq43 Length=242114 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 82738 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 82797 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 82798 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 82851 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| |||||||| ||| || || | || || | ||||| | ||||| Sbjct 82935 TACCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTATCCGAGGGCTCGACG 82993 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 82994 TCCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 83044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046723213675568