Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq436 147 5e-30 seq58 147 5e-30 seq150 138 3e-27 seq575 132 1e-25 seq378 111 4e-19 seq43 87.8 4e-12 >seq436 Length=23449 Score = 147 bits (162), Expect = 5e-30 Identities = 165/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 1086 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 1030 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || |||| ||| || || ||||| || ||||| |||||||| || ||||||| Sbjct 1029 TCGAGCCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCC 970 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||| ||||| || || ||||||||||| || |||||||| ||||| | || || Sbjct 969 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCT 910 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || || || || || Sbjct 909 CGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGT 870 >seq58 Length=197190 Score = 147 bits (162), Expect = 5e-30 Identities = 165/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 85170 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 85114 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || |||| ||| || || ||||| || ||||| |||||||| || ||||||| Sbjct 85113 TCGAGCCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCC 85054 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||| ||||| || || ||||||||||| || |||||||| ||||| | || || Sbjct 85053 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCT 84994 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || || || || || Sbjct 84993 CGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGT 84954 >seq150 Length=112013 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || |||||||| ||||| || || || ||| Sbjct 82601 CAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACACTCGATGTCGAGCCGTCGGAC 82542 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || ||||| ||||||||||| Sbjct 82541 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 82482 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || | || || ||| || Sbjct 82481 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAACATC 82422 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 82421 CAGAAGGAGTCGACGCTGCACCTGGT 82396 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || |||||||| || || || || || ||| Sbjct 90670 CAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCGGAC 90729 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || ||||| ||||||||||| Sbjct 90730 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 90789 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || | || || ||| || Sbjct 90790 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAACATC 90849 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 90850 CAGAAGGAGTCGACGCTGCACCTGGT 90875 >seq575 Length=11535 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || |||||||| || || || || || ||| Sbjct 1792 CAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTCGAGCCGTCGGAC 1851 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || ||||| ||||||||||| Sbjct 1852 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 1911 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || | || || ||| || Sbjct 1912 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAACATC 1971 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 1972 CAGAAGGAGTCGACGCTGCACCTGGT 1997 >seq378 Length=32279 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||| | ||||| ||||| || || |||||||||||||| || || ||||| ||||||||| Sbjct 3 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 62 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || ||||| || ||||| | || || | || || ||| Sbjct 63 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCGGACTACAAC 122 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 123 ATCCAGAAGGAGTCGACGCTGCACCTGGT 151 >seq43 Length=242114 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| ||||| || || ||||||||||| || |||||||| || || | Sbjct 82864 AGGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCG 82805 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| | || || ||| |||| || || || || ||||| || || Sbjct 82804 CACGCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGT 82757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203712816015248