Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5262 174 3e-38 seq5206 154 3e-32 seq18 120 6e-22 seq16745 105 1e-17 seq30 105 1e-17 seq17215 95.1 3e-14 >seq5262 Length=2108 Score = 174 bits (192), Expect = 3e-38 Identities = 460/689 (67%), Gaps = 25/689 (4%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || || || | Sbjct 624 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATATCCAA 683 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 684 GTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTG 743 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| |||| || | || ||||| | || ||| || || || Sbjct 744 CTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGAGTCGA 803 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| || ||| |||| | ||| ||||| | | || Sbjct 804 CTTGCCGGCACCGTTGGGGCCAACAACAGCGATACGCGAGGCGAGCGAACAC--GTCA-- 859 Query 319230 CAC-GTTGTCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT- 319284 ||| | | || ||| | || || || || |||| | || ||| ||| Sbjct 860 CACTGATATCGCGGATCGACGGCTTGTCACGGCCAGGGTACTGGTACGT-ACAGTTCGTC 918 Query 319285 AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || ||||| ||| || | ||| ||||| | | ||||| || ||||| ||| Sbjct 919 AGGCGAATGATCGGCTTACCCTTGTTCT---TGATATCGGCAAGGAAACCCGGCTCAGGG 975 Query 319342 AACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 319398 ||| | || || | | | | ||| ||| ||||||| || | || || | Sbjct 976 AACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTAGCCTCCGGCTTC 1032 Query 319399 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 319458 | ||| |||||||| || || || ||||||||| |||||||||| |||| ||||| Sbjct 1033 TGCTTGACGAACTCCGAAAGGTTACCCTTGTACGTCTTCAGCTTGCGGTTC---TCGTAG 1089 Query 319459 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 319518 ||||| || ||||| || | ||||||||| ||||||||||| ||||| || | || Sbjct 1090 TGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCGGAGTCGTGCGACACGATGAGCGAC 1149 Query 319519 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGA 319578 | |||| | | ||| | ||||||| || | |||| | ||||| ||| | Sbjct 1150 GTCACGTTCGTGAGGCTCGTCAGGTAGTCCTCGAGCCACTTGACGTTGTGGACATCCAAG 1209 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| || || || || | | || |||| |||||| ||||| || | Sbjct 1210 TGGTTCGTCGGCTCATCGAGCAGAAGAATATCAGCCTTCATGAGCATGGCACGGGCCAAC 1269 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | || ||||| ||||| || || ||||| Sbjct 1270 TCAAGCTTCATCTTCCAACCACCCGAAAG 1298 >seq5206 Length=2145 Score = 154 bits (170), Expect = 3e-32 Identities = 433/650 (67%), Gaps = 31/650 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| | Sbjct 1522 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATGTCCAA 1463 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 1462 GTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTG 1403 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| |||| || | || ||||| | || ||| || || || Sbjct 1402 CTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGCGTCGA 1343 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| || || ||| |||| | ||| ||||| || | | Sbjct 1342 CTTGCCGGCACCGTTGGGACCGACAACAGCGATACGCGAGGCGAGCGA-ACACG-----T 1289 Query 319230 CACGTTG---TCAAAGAT---TAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 |||| || || ||| | || || || || |||| | | | || || Sbjct 1288 CACGCTGATATCGCGGATCGACGGCTTGTCACGGCCAGGGTACTGGTA-CGTGCAGTTCG 1230 Query 319284 T-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGG 319339 | || ||||| ||| || |||| ||||| | | ||||| || ||||| | Sbjct 1229 TCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCGGCAAGGAAACCCGGCTCAG 1173 Query 319340 GGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 1172 GGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTAGCCTCCGGCT 1116 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || ||| |||||||| || || || ||||||||| |||||||||| |||| |||| Sbjct 1115 TCTGCTTGACGAACTCCGAAAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTCGT 1059 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | ||||| || ||||| || | ||||||||| || |||||||| |||||||| | Sbjct 1058 AGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAGCG 999 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA-CCACCTCACGTTAGACACAGAA 319575 ||| |||| | | ||| | ||||||| || |||| |||| | ||||| ||| Sbjct 998 ACGTCACGTTCGTGAGGCTCGTCAGGTAGTC-CTCAAGCCACTTGACGTTGTGGACATCC 940 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCAT 319625 | ||||| |||||||| || || || || | | || |||| |||||| Sbjct 939 AAGTGGTTCGTCGGCTCATCGAGCAGAAGAATATCAGCCTTCATGAGCAT 890 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 319858 GGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCG 319917 ||||| || || ||||| || || || |||||||| || || || ||||| ||| Sbjct 626 GGGAAACCCTCGAGCTGACCCTTGGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCG 567 Query 319918 TTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGA 319977 || || || |||||||||||||||| || || |||||| | || | |||||| || Sbjct 566 TTAGGACCGCACAGACCGTAGCGGTGACCACGCTTCAGGCGCATGCGAGCGTTGTTGAGG 507 Query 319978 AGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 || || | |||||||| || || || || || || | || |||||| Sbjct 506 AGGATCATACCACCATAAGCGAGCGAGAACTCGCAGTTGCAGAGATCC 459 >seq18 Length=85926 Score = 120 bits (132), Expect = 6e-22 Identities = 557/867 (64%), Gaps = 28/867 (3%) Strand=Plus/Plus Query 229781 TGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTTCCTCTGA 229840 ||||| | |||||||||||||| | ||| | |||||||| | ||||| || |||| Sbjct 68711 TGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACGGCCGAGGAGATTGATCTGG 68770 Query 229841 ACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 229899 ||| ||| || |||||| | || |||| ||| | || || |||||||||| Sbjct 68771 T-GCACGACCTCAAGGACTGGA---ACAACCTCACGGACAATGAGCGCTATTTCATCAAG 68826 Query 229900 CACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAAC 229959 || | || | ||||| || | | || || ||||| | ||||| || | ||| Sbjct 68827 CATGTGCTCGCGTTTTTTGCCGCCAGTGACGGCATTGTCAACGAAAACCTCGCCATGAAC 68886 Query 229960 TTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAAC 230019 || || || || ||| || |||||||| || || | | ||| | || | Sbjct 68887 TTCAGCAGCGAGGTGCAGGTCCCTGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATC 68946 Query 230020 GAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGCAA 230079 || ||||| || || || | ||||| || ||| || || ||| || Sbjct 68947 GAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAGACG 69006 Query 230080 GAACGGAACGAGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAG 230139 || |||| | ||| | || ||||| | ||| || || || || ||||| | Sbjct 69007 GAGAAGAACCACCTTCTCCGCGCGATTGAGACCATTCCTTGTGTGCAGAAGAAGGCCCAC 69066 Query 230140 TGGGCTCAGAAATGGCTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGTCGCCTGG 230196 ||||||| ||| ||| || || || || ||||| ||||| | ||||||| Sbjct 69067 TGGGCTCTGAAGTGGTGCGACTCTCGTCGCGCGGCGTTTGCGGAGCGCATTGTCGCCTTT 69126 Query 230197 GTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 | | || || ||||| | || || || |||||| | ||||||||||| ||| Sbjct 69127 GCGGCCGTCGAGGGTATCTTCTTCTCTGGATCCTTCTGCTCGATCTTTTGGCTCAAGAAG 69186 Query 230257 AAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTC 230316 ||| | |||||||||||| | | || || || ||||| || || ||||| ||| Sbjct 69187 CGTGGTCTCATGCCTGGCCTCAGCTTCTCGAATGAACTCATCTCGCGTGATGAGGGCCTC 69246 Query 230317 CATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGAC 230375 || | |||| || || | |||| || ||||| |||||||||||| ||| | Sbjct 69247 CACTGCGACTTCG-CGTGCCTGCTGTACTCGAAGCTTGCCAACAAGCTACCA---GAGTC 69302 Query 230376 GGTCAAACAA---ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGC 230432 | || || ||||| || || || | ||| ||||||||| || ||| | Sbjct 69303 GCGCATCCACGAGATCATCCGCGATGCCGTCTCGATCGAGAAGGAGTTCGTTCAGGACTC 69362 Query 230433 TATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCG 230491 | || || | || || ||||||||| | || ||| | ||||||||||| ||| Sbjct 69363 GCTCCCG-GTGGAGCTGATCGGCATGAACTCGTCCCTCATGTGCCAGTACATCGAGTTCT 69421 Query 230492 TAGCCGACCGCATTTTTGTTGCACTTGGT---TACGAGAAAGTGTACAAC-TCTAAGAAC 230547 || ||||| || | || ||||| | | ||| | ||||| ||| |||| Sbjct 69422 GTGCGGACCGTCTTCTCCACGCGCTTGGCGTGTCCAAGA---TCTACAAGGTCTC-GAAC 69477 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 || || | | ||||| | || ||||| || |||||||||||||||||||| |||||| Sbjct 69478 CCATTCGACTGGATGGACATGATCTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCGT 69537 Query 230608 GTCAGTGACTA-TCAGAGGCCTGGTGT 230633 || | || || || ||||| ||||| Sbjct 69538 GTGGGCGAGTACTCCAAGGCC-GGTGT 69563 >seq16745 Length=311 Score = 105 bits (116), Expect = 1e-17 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 66 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 7 Query 165770 CCCACG 165775 |||||| Sbjct 6 CCCACG 1 >seq30 Length=72463 Score = 105 bits (116), Expect = 1e-17 Identities = 201/289 (70%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 281735 CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 |||| ||||||||| || | || |||||| ||| || ||||| || |||| || || Sbjct 62573 CAGTAGCGTGAAGATGTAACGTGGGCTCGCGGCGTCCTTGCCACCTTGTAGCCGCGTGCC 62632 Query 281795 AAACTGACCCTCCGGCAACA--ACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCC 281852 |||||| ||| ||| | | | | | | ||| ||| ||||| || ||||| ||| Sbjct 62633 AAACTGGCCCGACGGATAGAGGAGCGGC--AGGTTGTTGGCGCCGACATAGTCCTGCGCC 62690 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCA 281912 | ||||||||| ||| || ||||| |||| ||||||||||| || |||| || || Sbjct 62691 ATGTTGACGATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGATACGCCGTGTGCTC-GCT 62749 Query 281913 ACA-TAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGA-AAGCGC 281970 || ||||| | ||| |||||||| || || |||| ||||| |||| ||| Sbjct 62750 GCAGTAACCCGCCAGCTGCGCTACCTTGACTTCCTTCGTCAGCTTGCGCTTGAGGCACGC 62809 Query 281971 AATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGG 282019 || | || || || || || || ||||| ||||| ||||| || || Sbjct 62810 AA-ACAAAACCTTCCGCTGCGAGACCTTGAGCCCATCGACGACGGAGGG 62857 >seq17215 Length=301 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 78 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 19 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 18 CCCACGGGGGGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057589838426510