Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq26 342 5e-89 seq18 309 3e-79 seq14351 114 1e-20 seq1872 102 8e-17 seq1843 93.3 4e-14 seq7289 89.7 5e-13 seq1170 89.7 5e-13 seq7513 86.0 6e-12 >seq26 Length=77529 Score = 342 bits (378), Expect = 5e-89 Identities = 456/627 (73%), Gaps = 10/627 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || | || ||||| ||||||||| | ||||| || || | || Sbjct 8579 GAGCCGTTCCTTCAGGAAAACCCGAACCGGTTCGTCCTCTTCCCGATTCAGGAGAACGAA 8520 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 |||||| |||||||| |||||||||||| |||||||| | ||| ||| | || || Sbjct 8519 GTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACTGCCGAAGAGATCGATCTT 8460 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || |||||| | | | | |||||||||||| | ||||||||||| Sbjct 8459 GTGCACGACCTCAAG-GACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCA 8401 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| || || || |||||||| |||||||| ||||||||||| || | | | || Sbjct 8400 CGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCAACGAGAACCTCGCCATGAACTT 8341 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | ||| ||||||||||| | |||||||| |||||||||||||| ||||||||||| | Sbjct 8340 CAG-CAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCTTCTACGGCTTCCAGATCGCCATCG 8282 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGG 116930 ||||| | ||||| || |||||||| ||||| ||||||||| | | | ||| Sbjct 8281 AGAACATCCACTCTGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGACCAGACGG 8222 Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 || |||| | || | | ||| || ||||| || || ||||| | |||||||| Sbjct 8221 AGAAGAACCACCTTCTCCG---CGCGATTGAGACCATCCCTTGCGTGCAGAAGAAGGCCC 8165 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| || ||| || | | || || || | |||||| | || |||| Sbjct 8164 ACTGGGCTCTCAAGTGGTGCGACTCGCGCCGCGCGGCGTTTGCGGAGCGCATTGTCGCCT 8105 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 ||||||||||||||||| ||||||| |||||| ||| | | || || |||||||||| Sbjct 8104 TCGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCGATCTTCTGGCTCAAGA 8045 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || ||||||||||||||||| | ||| |||||||||||||| | || ||||| | Sbjct 8044 AGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCC 7985 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGT 117197 | || |||||||| || || |||||| Sbjct 7984 TCCACTGCGACTTCGCGTGCCTGCTGT 7958 >seq18 Length=85926 Score = 309 bits (342), Expect = 3e-79 Identities = 595/864 (69%), Gaps = 20/864 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || | || |||||| ||| ||||| | || || || || | || Sbjct 68650 GAGCCGTTCCTTCAGGAAAACCCCAACCGCTTCGTTCTCTTTCCGATTCAGGAGAACGAG 68709 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 |||||| |||||||| |||||||||||| |||||||| | ||||||| | || ||| Sbjct 68710 GTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACGGCCGAGGAGATTGATCTG 68769 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || | | | || |||||| | | | | ||||| |||||| ||||||||||||| Sbjct 68770 GTGCACGACCTCAAG-GACTGGAACAACCTCACGGACAATGAGCGCTATTTCATCAAGCA 68828 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||| || ||||| |||||||| |||||||| |||||||| || || | | | || Sbjct 68829 TGTGCTCGCGTTTTTTGCCGCCAGTGACGGCATTGTCAACGAAAACCTCGCCATGAACTT 68888 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | ||| ||||||||||| | ||||| || |||||||||||||| ||||||||||| | Sbjct 68889 CAG-CAGCGAGGTGCAGGTCCCTGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATCG 68947 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGG 116930 ||||| | |||||||| |||| ||| ||||| ||||||||| | | | ||| Sbjct 68948 AGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAGACGG 69007 Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 || |||| | || | | ||| || ||||| || || || || | |||||||| Sbjct 69008 AGAAGAACCACCTTCTCCG---CGCGATTGAGACCATTCCTTGTGTGCAGAAGAAGGCCC 69064 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| ||| ||| || | | || || || | |||||| | || |||| Sbjct 69065 ACTGGGCTCTGAAGTGGTGCGACTCTCGTCGCGCGGCGTTTGCGGAGCGCATTGTCGCCT 69124 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 | |||||||||||||| ||||||| || || ||| | | || ||||||||||||| Sbjct 69125 TTGCGGCCGTCGAGGGTATCTTCTTCTCTGGATCCTTCTGCTCGATCTTTTGGCTCAAGA 69184 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || || |||||||| ||||| | ||| || || |||||||| | || ||||| | Sbjct 69185 AGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAATGAACTCATCTCGCGTGATGAGGGCC 69244 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTC---AAGCATTTGGTGCAGCGACCGAGC-GCG 117226 | || |||||||| || || |||||| | |||| ||| || | | | | | | | Sbjct 69245 TCCACTGCGACTTCGCGTGCCTGCTGTACTCGAAGC--TTG--CCAACAAGCTACCAGAG 69300 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 ||||| || |||||| || ||| || ||| | |||||| || ||| | || Sbjct 69301 TCGCGCATCCACGAGATCATCCGCGATGCCGTCTCGATCGAGAAGGAGTTCGTTCAGGAC 69360 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345 |||| |||||| ||| | || | || | || | |||| || ||||||||||| Sbjct 69361 TCGCTCCCGGTGGAGCTGATCGGCATGAACT-CGTCCCTCATGTGCCAGTACATCGAGTT 69419 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 | || ||| | || || | || ||| | || ||||| |||||| | ||||| Sbjct 69420 CTGTGCGGACCGTCTTCTCCACGCGCTTGGCGTGTCCAAGATCTACAAGGTCTCGAACCC 69479 Query 117406 GCTGGACTTTATGAACCTCATCTC 117429 | |||| ||| || | ||||| Sbjct 69480 ATTCGACTGGATGGACATGATCTC 69503 >seq14351 Length=379 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 ||||| | || || | ||||| ||||||||||| |||| ||||| || || |||| || Sbjct 366 TCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTGATCTTCG 307 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | | Sbjct 306 CCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGA 247 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || || ||| | ||| || | || || Sbjct 246 CGCTCCACCTGGTGCTCCGCCTGCGTGGTGG 216 >seq1872 Length=9383 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| || ||||| ||||| || |||| ||| Sbjct 9383 GGCATCCCGCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGC 9324 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | |||||||| || ||| |||| || | Sbjct 9323 ACGCTGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGC 9264 Query 40912 GGCGGC 40917 || ||| Sbjct 9263 GGTGGC 9258 >seq1843 Length=9525 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 |||| ||||| || || |||| ||| ||||| ||||| || || | ||||| ||| | Sbjct 3148 CGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGG 3089 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||||| | |||||||| || ||| | ||| || | || || ||| Sbjct 3088 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 3030 >seq7289 Length=1152 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 1006 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 1065 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| | || || | ||||| ||||||||||| |||| Sbjct 1066 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 1125 Query 40806 CCAGCAACGACTCATCTACGCGGGCAA 40832 ||||| || || |||| ||| ||||| Sbjct 1126 TCAGCAGCGCCTGATCTTCGCCGGCAA 1152 >seq1170 Length=14133 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 |||| ||||| || || |||| ||| ||||| ||||| || || | ||||| ||| | Sbjct 11015 CGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGG 11074 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||||| | || ||||| || ||| | ||| || | || || ||| Sbjct 11075 ACTACAACATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 11133 >seq7513 Length=1086 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 147 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 88 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | | | ||||| | || || | ||||| ||||||||||| |||| Sbjct 87 TTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 28 Query 40806 CCAGCAACGACTCATCTACGCGGGCAA 40832 ||||| || || |||| ||| ||||| Sbjct 27 TCAGCAGCGCCTGATCTTCGCCGGCAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515107931973520