Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq5268 96.9 2e-15 seq757 96.9 2e-15 >seq5268 Length=2107 Score = 96.9 bits (106), Expect = 2e-15 Identities = 408/631 (65%), Gaps = 10/631 (2%) Strand=Plus/Plus Query 97003 AGTGTTGGGAAAG-GCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATT 97061 || |||||||| | || |||| || ||| ||||| | |||| | || | || | Sbjct 62 AGCGTTGGGAACGCGCGTGGG-GTGCGCCCTAGCTGAACCTTGAGGGGTTCGACATGGTC 120 Query 97062 CACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGAC 97121 || |||||||||||| || || | |||||||| || || || | | | || || Sbjct 121 CAGATAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGGAGTCCTGTAAC 180 Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 || ||||||| | || || || | ||||| || ||||| || ||||| || || || Sbjct 181 CTGCGCGATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGCCC 240 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 ||| || ||||| | ||||| | || || || |||| || || || |||||||| Sbjct 241 CATGTCGGCTGAGCGCTGATACATTTGGCACGATAGCTCACCGTCCGCGACGTAAAACTG 300 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 | || | || |||||||||| ||||| | || ||| ||||| || | Sbjct 301 GCAGAACATGTGGCAGGGGGGCAGTGCCATCTCCTTAAGATCGGCCGGGTTCCATGCTGA 360 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAA-TT 97360 ||| | || | | ||| | || || || | | ||| ||| | || || || | Sbjct 361 CATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGCTTATGAATCACCT-CTGCAAGCT 419 Query 97361 GATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTG-ATATTCTGCTCCAAAATGC 97419 | || ||||| | || || | | || | | | | || | ||| || || || Sbjct 420 GGTCGACGCCCTGGCCGGTGTAGTCG-GCGTGCATCGTCGTGTACTTTGCGCCGAAGTGG 478 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA-G 97478 | ||| ||||| || || || ||||| |||||||| |||| | || || || ||||| | Sbjct 479 CGCCACTGGAAACCGTACACCGGTCCGAGGTCTCCGGCTTCACGATGACCGAGACCAATG 538 Query 97479 CTTATCTAAATAGGACCTAGATCCATTTGCATCCCA-AATGTGCACACCAGATGCTGCAA 97537 ||| || | ||| | | || ||||| ||||||| | | || || | ||||| Sbjct 539 CTT-TCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGATGCCCTTGTCCTGCAG 597 Query 97538 GCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCC 97597 | |||| || || || || ||||| |||||||||| || || |||| || | || Sbjct 598 GGTCTTGGC-GTTGGTGTCACCACTGATGAACCACAACAGCTCCTCTGCAACGCCGCGCC 656 Query 97598 AAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 | || || | || || |||| || ||||| Sbjct 657 AGAACACGCGTTTGGTCGTTAGAAGTGGAAA 687 >seq757 Length=19743 Score = 96.9 bits (106), Expect = 2e-15 Identities = 185/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 97003 AGTGTTGGGAAAG-GCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATT 97061 || |||||||| | || |||| || ||| ||||| | |||| | || | |||| Sbjct 19484 AGCGTTGGGAACGCGCGTGGG-GTGCGCCCTAGCTGGACCTTGAGGGGCTCGACATGATC 19426 Query 97062 CACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGAC 97121 || ||||||||||| || || | |||||||| || || || | | | || || Sbjct 19425 CAGGTAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGCAGCCCTGTAAC 19366 Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 || ||||||| | || || || | ||||| || ||||| || ||||| || || || Sbjct 19365 CTGCGCGATCAGCCGCGTCAAGAGCGCGTAGCTCGCGATGTTGAAGGGCACACCGAGACC 19306 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 ||| || ||||| | ||||| | ||| || || |||| || || || |||||||| Sbjct 19305 CATGTCGGCTGAGCGCTGATACATCTGGCAAGACAGCTCACCGTCCGCGACGTAAAACTG 19246 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCAT 97271 | || | ||||||||||||| ||||| Sbjct 19245 GCAGAACATGTGACAGGGGGGCAGTGCCAT 19216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346710979968890