Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq456 183 3e-41 seq683 129 5e-25 seq7289 100 2e-16 seq7513 96.9 3e-15 seq14351 95.1 1e-14 >seq456 Length=26154 Score = 183 bits (202), Expect = 3e-41 Identities = 532/817 (65%), Gaps = 18/817 (2%) Strand=Plus/Minus Query 132916 TGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCG 132975 |||| | || |||||||| || || || |||| ||||||||| ||||| || || Sbjct 7528 TGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCAT---CG 7472 Query 132976 ACACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTA 133032 || | | | | | || || ||||||| | |||||||| || ||||| | Sbjct 7471 ACGTGAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGA 7412 Query 133033 TGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCG 133092 || | | | |||||||| ||||||| | | ||| ||||||||||| | | Sbjct 7411 TGTAGGCGCCGCGGTCGGCCGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGG 7352 Query 133093 TCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTT 133152 ||||| | | |||||| | || || || | ||||||||| || |||| | Sbjct 7351 TCTTGTACTTCTCCTTGACCGCGTCGGGGATCGCGCGCACGTTCTGCACCGAGCCGTGGT 7292 Query 133153 CGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGA 133212 | || |||| |||||||| || || || | ||| |||| ||||| ||| | || | Sbjct 7291 CATGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 7232 Query 133213 CGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 ||| |||| ||| || | ||||||||||||||| ||||| | | || | || | Sbjct 7231 TGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGG 7172 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||||||| |||| || ||||||||||| || |||||||| |||| |||||| |||| Sbjct 7171 TCGTGAACGGCTCGATCGACTCGTTGTTGCCAAGAATCTGCGCGGTCGACGCCGTCGGCA 7112 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGT 133392 || ||| | || || ||||| | |||||||||| || | | || || | | Sbjct 7111 TGGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTGAGCGCCG 7052 Query 133393 TCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAAT 133452 ||||||||| || | |||| || | | || | | ||| | | Sbjct 7051 CCCAGTCCCAGAG-----------GCCCGACGTCG-GCGTGACGCCCCACATGTCGTACT 7004 Query 133453 GCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGG 133512 | || || ||| |||||||||| | || || |||| || |||| |||| Sbjct 7003 GGAAGATGCCCTTGCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGTGCTCCTTGG 6944 Query 133513 CCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGA 133572 | ||||| | ||||||| || | ||||| | || || ||| | ||||| Sbjct 6943 CGAGCTCCATGGACGCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGA 6884 Query 133573 CGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | ||| |||||||| ||| | ||| | | | |||| ||||||||||| | || Sbjct 6883 GCTCGCGGGCCTCGTCGCTCTCGAACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGAC 6824 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | |||| |||||| || || || ||||| | ||| | ||| | ||| Sbjct 6823 CCTGCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCCGGGATGG 6764 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 | |||| ||||| |||||||| |||||| || ||||| Sbjct 6763 GGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCG 6727 >seq683 Length=21216 Score = 129 bits (142), Expect = 5e-25 Identities = 528/822 (64%), Gaps = 28/822 (3%) Strand=Plus/Plus Query 132916 TGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCG 132975 |||| | || |||||||| || || || |||| ||| ||||| ||||| || || Sbjct 18587 TGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCATGCGTAGAAGTGCAT---CG 18643 Query 132976 ACACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTA 133032 || | | | | | || || ||||||| | |||||||| || ||||| | Sbjct 18644 ACGTGAGCTTGCTGATCGTTGGATCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGA 18703 Query 133033 TGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCG 133092 || | | | | |||||||||||||||| | | |||| ||||||||||| | | Sbjct 18704 TGTAGGCACCGCGGTCGGCGGCCATGTCCAGCACGGCCTTTTGCTTGATCTCCCACACGG 18763 Query 133093 TCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTT 133152 ||||| | | |||||| | || || | | |||||| || || |||| | Sbjct 18764 TCTTGTACTTCTCCTTGACCGCGTCGGGGATCACACGCACGTTCTGAACCGAGCCGTGGT 18823 Query 133153 CGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGA 133212 | | |||| |||||||| || || || | || | || ||||| ||| | || | Sbjct 18824 CATGTAGGATCTGGTTGCGCACCTCGGGCGTCCAGATTCCCAGCTCGATGAGCTCCTTCA 18883 Query 133213 CGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 ||| |||| ||| || | ||||||||||||||| ||||| | | || | || | Sbjct 18884 TGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGG 18943 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||||||| || | || ||||||||||| || |||||||| |||| ||||| |||| Sbjct 18944 TCGTGAACGGCTCAATCGACTCGTTGTTGCCAAGAATCTGCGCAGTCGATGCCGTTGGCA 19003 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGT 133392 | ||| | || || ||||| | || || |||| || | | || || | | Sbjct 19004 TAGGCGCGAGCAGCAGCGAGTTGCGCACACCATACTGCTTGACGCTGGCCTTGAGCGCCG 19063 Query 133393 TCCAGTCCCACAG----ATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGA 133448 ||||||||| || || || | |||||| | | | |||||| ||| || Sbjct 19064 CCCAGTCCCAGAGGCCCGACGTCGGCGT----GACGCC--CCACAT-GTCGTA-TTG-GA 19114 Query 133449 AAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATT 133508 | ||| || |||||||||| | || || |||| || |||| Sbjct 19115 AGATG-------CCTTTGCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGTGCTCC 19167 Query 133509 TTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAG 133568 ||||| || || | ||||||| || | ||||| | || || ||| | | Sbjct 19168 TTGGCGAGTTCCATGGACGCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTG 19227 Query 133569 TTGACGAACCTGGCATCGTCGCTATCGTAGGCGAT-GTCGAGAAGAACAAACGCGTCGGC 133627 |||| | ||| |||||||| ||| | | ||| | | | |||| |||||||||||| Sbjct 19228 TTGAGTTCGCGGGCCTCGTCGCTCTCGAACG-GATGGCCCATGAGAATAAACGCGTCGGC 19286 Query 133628 CAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGC 133687 | |||||| | || | |||||| || || || | ||||| | ||| | ||| | Sbjct 19287 GAGACCCTGCACACCAATGCCGATCGGGCGGTGGCGCATGTTGCTGCGCTCGGCCTCTGG 19346 Query 133688 CGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 | || |||| ||||| |||||||| |||||| | ||||| Sbjct 19347 GATTGGGTAGTAGTTGATGTCGATGACCTTGTTCAAGTTGCG 19388 >seq7289 Length=1152 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || ||||||||||| ||||| |||||||||||||| || || Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || || | || | | |||||| |||||| |||| || | ||| ||||||||| Sbjct 1092 TGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 1033 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || |||||||| Sbjct 1032 AGAGTCTTGACGAAGATCTGCAT 1010 >seq7513 Length=1086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || ||||||||||| ||||| |||||||||||||| || || Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || || | || | | | |||| |||||| |||| || | ||| ||||||||| Sbjct 61 TGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 120 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || |||||||| Sbjct 121 AGAGTCTTGACGAAGATCTGCAT 143 >seq14351 Length=379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 233 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 292 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| || || ||| |||| || ||||||||||| ||||| |||||||||||||| Sbjct 293 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTC 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433739051179684