Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq456 233 4e-56 seq683 226 6e-54 seq26 100 6e-16 seq18 100 6e-16 seq14681 95.1 3e-14 >seq456 Length=26154 Score = 233 bits (258), Expect = 4e-56 Identities = 668/1009 (66%), Gaps = 36/1009 (4%) Strand=Plus/Plus Query 248738 TCGCCGATGACGT---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGA 248794 ||||||| ||||| ||| | | |||| || |||| | ||| | || || |||| Sbjct 5651 TCGCCGAGGACGTGTACCAGATCATCATGGAGCACAAGG---ACCGCTTGAACTCGGCGA 5707 Query 248795 TTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGT 248854 | | ||| | ||||| |||||||| | ||||| ||||| ||||| ||||| |||| Sbjct 5708 TCATCCACGACCGCGATTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGT 5767 Query 248855 ATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGG 248914 | || || | | |||||| ||| ||| || ||||| ||| | | || || | Sbjct 5768 ACCTGCTGCGCGTCGGCGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCG 5827 Query 248915 CTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTG 248974 ||||||| || |||||| | ||||| || || ||||||||||||| ||| Sbjct 5828 CTGTCGGCATCCACAAGCACGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGC 5887 Query 248975 AACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGC 249034 || ||| | || || || || |||||||| || ||||| || || | |||| Sbjct 5888 AAAGCTTCTTCACGCACGCGACGCCGACGCTGTTTAACGCTGGCACGCCGCGCCCGCAGC 5947 Query 249035 TGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGC 249094 | || ||||| || || |||||| | |||||||| |||| ||||| || ||||||| Sbjct 5948 TCTCGTCTTGCTTCCTGCTGGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGC 6007 Query 249095 TTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACA 249154 | || ||| || || || || | || ||||| |||||| | ||| ||||| Sbjct 6008 TCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACA 6067 Query 249155 TCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCC 249213 |||| || | ||||||||| || || || || || | | || |||| || Sbjct 6068 TCCGCGCCACCAACTCGTACATCCGCGGCACGAA-CGGCTCGTCGAACGGACTCGTGCCG 6126 Query 249214 CTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAG 249270 | || || || | ||| || | | | | |||||| ||| || || ||| Sbjct 6127 ATGCTCCGCGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAG 6186 Query 249271 GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTG 249330 || |||||||| ||||| | || ||||||||| || || || |||||||| ||| | Sbjct 6187 GGCTCGTTCGCGATGTACCTCGAGCCGTGGCACGCGGACATCTTCGAGTTCCTCGACCTC 6246 Query 249331 AAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTC 249390 || |||||| |||| ||||||||| | || ||||| || ||||||| | ||||| || Sbjct 6247 AAGAAGAACCACGGTAACGAGCTCCATCGTGCTCGTGATCTGTTCTACGCCATGTGGATC 6306 Query 249391 TCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTC 249449 | || | |||||| |||||| ||||| ||||||| |||| || |||| | ||| Sbjct 6307 CCGGATCTCTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGA-GCCTCTTCTGCCCGAA 6365 Query 249450 CGACGCCCCGGACCT---CATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--A 249503 ||| ||||||| || || ||| | |||| ||| |||| | || || || | Sbjct 6366 CGAGGCCCCGGGGCTTTACA-CGACGT--GGGGCGACGAGTTCG---AGGCGCTGTACCA 6419 Query 249504 GAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGC 249557 | ||||| | ||| || ||||||| ||| || | | || || || Sbjct 6420 CCAGTACGAGAAGGAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGC 6479 Query 249558 GAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTG 249617 || | | ||||| ||||| ||||| || |||||| ||| ||| ||| |||| Sbjct 6480 GA---TCCTCGAGTCTCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTG 6536 Query 249618 CAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAG 249676 |||| |||| ||||| | | | || || || ||||||||| || || || ||| | Sbjct 6537 CAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGC-G 6595 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||||| | | ||| |||| || ||| | ||||| |||||||| || Sbjct 6596 AGGTGCTCGAGTACACGTCGCCAGACGAGGTCGCCGTGTGCAACCTCGC 6644 >seq683 Length=21216 Score = 226 bits (250), Expect = 6e-54 Identities = 438/641 (68%), Gaps = 14/641 (2%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||| | ||||| ||||| ||||| ||||| |||||||| || | Sbjct 20393 GATTTTGACTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTGCTGCGCGTC 20334 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| ||| ||| || ||||| ||| | | || || |||||||| || ||| Sbjct 20333 GGTGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCAC 20274 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| | ||||| || || ||||||||||||| ||| || ||| | || Sbjct 20273 AAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 20214 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGTG 249044 || || || |||||||| || ||||| || || |||| |||||| || || Sbjct 20213 CACGCGACGCCGACGCTGTTTAACGCGGGCACGCCGCGTC----CGCAGCTGTCGTCTTG 20158 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| || ||||||||| | |||||||| |||| ||||| || |||||||| || ||| Sbjct 20157 CTTCCTGCTTGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTG 20098 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || || || || | || ||||| |||||| | ||| |||||| || || | Sbjct 20097 CGCATGCATCTCGAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCAC 20038 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCTTCGAT 249223 ||||| ||| || || || || || | | || | || || | || || Sbjct 20037 CAACTCGTATATCCGCGGCACGAA-CGGCTCGTCGAACGGCCTTGTGCCGATGCTCCGCG 19979 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCG 249280 ||| | ||| || | | | | |||||| || || |||||||| ||||||| Sbjct 19978 TGTTTAACGACACGGCGCGCTACGTGGACCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCG 19919 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 | ||||| | ||| ||||||||| ||||| || |||||||| ||| | || |||||| Sbjct 19918 CGATGTACCTCGAACCGTGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGAAGAACC 19859 Query 249341 ACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGT 249400 |||| ||||||||| | || ||||| || ||||||| | ||||| || | || | | Sbjct 19858 ACGGTAACGAGCTCCATCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCT 19799 Query 249401 TCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT 249441 ||||| || ||| ||||| ||||||| |||| || |||| Sbjct 19798 TCATGAAGCGAGTCGAGGCCAACGGCGAGTGGA-GCCTCTT 19759 >seq26 Length=77529 Score = 100 bits (110), Expect = 6e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || |||||||||||||||||||| Sbjct 7666 ACACCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTTCCCTGGAGC 7725 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTG 157351 || |||||||||||||| ||||| ||||| | | ||||| | |||| Sbjct 7726 GAGATCATGTCCATCCAATCGAACGGGTTCGAGACCTTGTAGATCTTG 7773 >seq18 Length=85926 Score = 100 bits (110), Expect = 6e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 69563 ACACCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTCCCCTGGAGC 69504 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTG 157351 || |||||||||||||| ||||||||||| | | ||||| | |||| Sbjct 69503 GAGATCATGTCCATCCAGTCGAATGGGTTCGAGACCTTGTAGATCTTG 69456 >seq14681 Length=368 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 || || |||||| || | | || || ||||| ||| | ||||| | |||||| ||||| Sbjct 308 CCACCGTTCAAGATCATCGTGCTCGATGAGGCCGACTCGATGACAGGCGACGCACAGTCG 249 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 || || || || | |||||| | ||||| || ||||| || ||||| | || || Sbjct 248 GCGCTGCGTCGCATGATGGAAAACTACTCCAAGGTCACGCGCTTCTGCCTCATTTGTAAT 189 Query 254325 TACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||| | |||| |||||| ||| | ||||| || |||||||||||||| || Sbjct 188 TACGTCAGCCGAA--TCATCGAACCGATCGCTTCGCGCTGCGCCAAGTTTCGCTT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073528709391936