Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7289 93.3 3e-14 seq7513 87.8 1e-12 seq14351 84.2 2e-11 >seq7289 Length=1152 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| || || ||||| | |||||||||||| || || Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||||| || | | ||||||| | ||| || || | || ||||||||||| ||| Sbjct 1092 TGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 1033 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| || ||||| ||||| || Sbjct 1032 AGAGTCTTGACGAAGATCTGCATCTT 1007 >seq7513 Length=1086 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| || || ||||| | |||||||||||| || || Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||||| || | | ||| ||| | ||| || || | || ||||||||||| ||| Sbjct 61 TGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 120 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||| || ||||| ||||| || Sbjct 121 AGAGTCTTGACGAAGATCTGCATCTT 146 >seq14351 Length=379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| ||||||||||| || ||| |||| || Sbjct 234 ACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCG 293 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || ||||| | |||||||||||| Sbjct 294 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGG 353 Query 45248 ATTTTTTGCTTAAC 45261 || || ||||| || Sbjct 354 ATCTTCTGCTTGAC 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394992011607817