Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18 161 1e-34 seq26 145 1e-29 seq683 96.9 4e-15 >seq18 Length=85926 Score = 161 bits (178), Expect = 1e-34 Identities = 314/460 (68%), Gaps = 9/460 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || ||||| |||||||| || ||||| || | || | ||| || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| || ||||| || |||||||| || |||||||| || || ||| ||||| | Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAG 69152 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | |||||||| || || || || |||||||| | || | ||| || | | |||| | Sbjct 69151 AGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGC-GA 69093 Query 33754 CATGTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | | || ||||| ||||||| | ||||||||| | |||||||| || || || Sbjct 69092 CGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTCA 69033 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || | || | ||| || || | || || | || || || || | || Sbjct 69032 ATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAGC 68973 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||| ||||| || ||||| || ||||| ||||| || |||||||| || | ||| Sbjct 68972 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCC 68913 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCAT 33987 || | | |||||| || | | || |||| || | ||||| || || || || | Sbjct 68912 TCAGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCGT 68855 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||||||| ||||||||||| | ||||| || || ||||| Sbjct 68854 CACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATA 68815 >seq26 Length=77529 Score = 145 bits (160), Expect = 1e-29 Identities = 375/565 (66%), Gaps = 15/565 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || ||||| |||||||| || ||||| || | || | ||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | |||| |||||||| ||||||||||| || ||||| || || || ||| || || | Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGGAGCCCG 8077 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC------CGG 33747 | |||||||| || || || || || ||||| | || | ||| || ||| ||| Sbjct 8078 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCGG 8136 Query 33748 CGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 ||| ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 8137 CGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTC 8193 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || || || | || | ||| || || | || || | || || || || | Sbjct 8194 TCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGC 8253 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 || ||||| || || || ||||| || ||||| ||||| || |||||||| || | Sbjct 8254 AGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGC 8313 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTC 33984 ||||| | | |||||| || | | || |||| || | || || || || || | Sbjct 8314 GCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATGC 8371 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 34044 | |||||||| ||||| ||||| | || || || || || || |||| || | Sbjct 8372 CGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGA 8431 Query 34045 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 | || ||||| || |||| || | | ||| | ||||| | ||||| || | Sbjct 8432 GGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTCG 8491 Query 34105 CCTCTGCCTTTTTATACATATTCCA 34129 |||| ||||| || ||||| | ||| Sbjct 8492 CCTCGGCCTTCTTGTACATCTGCCA 8516 >seq683 Length=21216 Score = 96.9 bits (106), Expect = 4e-15 Identities = 354/551 (64%), Gaps = 10/551 (2%) Strand=Plus/Plus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 |||||| |||| ||| ||||| ||||| |||||||| || ||||| | || || Sbjct 19767 CCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAA 19826 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | ||| |||||| || ||||| || || ||||||||| | | Sbjct 19827 CAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAA 19886 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT----C 63423 ||||| | ||||||||||| | ||| || || | | || || || | || | Sbjct 19887 GATATCCGCGTGCCACGGTTCGAGGTACATCGCGA----ACGAGCCCTTTCGCTTGCCGC 19942 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | ||||| || | ||| | || |||| ||| | || | | ||| || | || |||| Sbjct 19943 CACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGT 20002 Query 63484 TTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATA 63543 | || || || || ||| |||||| |||||||||| || | | Sbjct 20003 TCGACGAGCCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCA 20062 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603 ||| || || || ||| || ||||| ||||||| | || | |||||| ||||||| Sbjct 20063 CACCGATGCCGCCGGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGC 20122 Query 63604 CTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 | || || || || ||||| ||| || || || |||| || |||| | | Sbjct 20123 CCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCG 20182 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63722 | ||||| ||||| | || || | |||||||| || | ||| || | ||| | | Sbjct 20183 TGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA-CTCG 20241 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 |||||||| | || | ||| || || | || || || || ||||| || | | | Sbjct 20242 TACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATC 20301 Query 63783 ATGTGCTGAGG 63793 || ||||| || Sbjct 20302 ATCTGCTGCGG 20312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629681583016560