Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18 174 2e-38 seq26 149 8e-31 >seq18 Length=85926 Score = 174 bits (192), Expect = 2e-38 Identities = 400/596 (67%), Gaps = 11/596 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || || ||||| |||||||| || ||||| || | || | ||| || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | |||| || ||||| || |||||||| || |||||||| || || ||| || |||||| Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGA-GCAGAAGGATCCA 69153 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || ||||| || || || || ||||||||||| | || | ||| || | | || | | Sbjct 69152 GAGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGC-G 69094 Query 36329 TCATGTAT----CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | | | |||||| ||||||| | ||||||||| | |||||||| || ||||| Sbjct 69093 ACGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTC 69034 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || | || | ||| || || | || || | || || ||||| | || Sbjct 69033 AATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAG 68974 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 |||| ||||| || ||||| || ||||| || || || |||||||| || | || Sbjct 68973 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGC 68914 Query 36505 CTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCG 36562 ||| | | ||| || || | | || |||| || | ||||| || || || ||| Sbjct 68913 CTCAGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCG 68856 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 |||||||| ||||||||||| | ||||| || || ||||| || || || || Sbjct 68855 TCACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATAGCGCTCATTGTCCGTGAGG 68796 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 || ||||| || |||| || | | ||| | || || | ||||| || ||| Sbjct 68795 TTGTTCCAGTCCTTGAGGTCGTGCACCAGATCAATCTCCTCGGCCGTCCAGAAGCTCGCC 68736 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || ||||| || ||||| | ||| | || | | ||||| ||||| | ||| || Sbjct 68735 TCGGCCTTCTTGTACATCTGCCACACCTCGTTCTCCTGAATCGGAAAGAGAACGAA 68680 >seq26 Length=77529 Score = 149 bits (164), Expect = 8e-31 Identities = 378/566 (67%), Gaps = 17/566 (3%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || || ||||| |||||||| || ||||| || | || | ||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | |||| |||||||| ||||||||||| || ||||| || || || ||| || || || Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGGAGCCC 8076 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC------CG 36322 || ||||| || || || || ||||| ||||| | || | ||| || ||| || Sbjct 8077 GAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCG 8135 Query 36323 GCAC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 || | ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 8136 GCGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGT 8192 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 ||| || || | || | ||| || || | || || | || || ||||| | Sbjct 8193 CTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 8252 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 || ||||| || || || ||||| || ||||| || || || |||||||| || | Sbjct 8253 CAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACG 8312 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATT 36559 ||||| | | ||| || || | | || |||| || | || || || || || Sbjct 8313 CGCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATG 8370 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 ||||||||||| ||||| ||||| | || || || || || || ||||| || Sbjct 8371 CCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTG 8430 Query 36620 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 36679 || || ||||| || |||| || | | ||| | ||||| | ||||| || Sbjct 8431 AGGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTC 8490 Query 36680 GCCTCTGCCTTTTTATACATATTCCA 36705 ||||| ||||| || ||||| | ||| Sbjct 8491 GCCTCGGCCTTCTTGTACATCTGCCA 8516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658030659356680