Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq757 224 8e-54 seq5268 199 3e-46 >seq757 Length=19743 Score = 224 bits (248), Expect = 8e-54 Identities = 320/449 (71%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || |||| || ||||| | || ||||| | | ||||| || || || | |||| Sbjct 19478 GGGAACGCGCGTGGGGTGCGCCCTAGCTGGACCTTGAGGGGCTCGACATGATCCAGGTAA 19419 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 | ||| ||||| || | |||||| | ||||| |||| ||| || || || || ||| Sbjct 19418 ATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGCAGCCCTGTAACCTGCGCG 19359 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 ||||| ||||| ||| |||||||| |||||||| || || || ||||| ||||||||| Sbjct 19358 ATCAGCCGCGTCAAGAGCGCGTAGCTCGCGATGTTGAAGGGCACACCGAGACCCATGTCG 19299 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | ||| |||| |||||| |||||||| || || ||||||||||| || || Sbjct 19298 GCTGAGCGCTGATACATCTGGCAAGACAGCTCACCGTCCGCGACGTAAAACTGGCAGAAC 19239 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | |||||| || || || |||||| | ||| || || |||||||| || |||| | Sbjct 19238 ATGTGACAGGGGGGCAGTGCCATCTCCTTGAGATCGGCCGGGTTCCATGCTGACATGATT 19179 Query 21189 ATGCGCCGATCGTGGGGCCGCCTGTTAA---TTAGATCCACCACGTAACGCAGCTGGTCC 21245 ||||| || |||| || | | || | | ||| |||| || | |||||||| Sbjct 19178 ATGCGACGGTCGTTCGGATTCGTCTTCAGTTTGAGAATCACCTCGGCA---AGCTGGTCG 19122 Query 21246 ACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCAC 21305 || ||||||||| ||||| ||||| | | |||||| || || || || | |||| Sbjct 19121 ACGCCCTGACCCGTGTAGTCGGCGTGCATCGTCGTGTACTTTGCGCCGAAGTGGCGCCAC 19062 Query 21306 TGGAACCCGTACACCGGCCCCAGATCGCC 21334 ||||| ||||||||||| || || || || Sbjct 19061 TGGAAGCCGTACACCGGTCCGAGGTCTCC 19033 >seq5268 Length=2107 Score = 199 bits (220), Expect = 3e-46 Identities = 422/624 (68%), Gaps = 8/624 (1%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 || |||| || ||||| | || ||||||| | ||||| || || |||| ||| Sbjct 68 GGGAACGCGCGTGGGGTGCGCCCTAGCTGAACCTTGAGGGGTTCGACATGGTCCAGATAA 127 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 | ||| ||||| || | |||||| | ||||| |||| || || || || || ||| Sbjct 128 ATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGGAGTCCTGTAACCTGCGCG 187 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 ||||| ||||| ||| |||||||| |||||||| || || || ||||| ||||||||| Sbjct 188 ATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGCCCCATGTCG 247 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | ||| |||| ||||| || ||||| || || ||||||||||| || || Sbjct 248 GCTGAGCGCTGATACATTTGGCACGATAGCTCACCGTCCGCGACGTAAAACTGGCAGAAC 307 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | ||| || || || || |||||| | || || || |||||||| || |||| | Sbjct 308 ATGTGGCAGGGGGGCAGTGCCATCTCCTTAAGATCGGCCGGGTTCCATGCTGACATGATT 367 Query 21189 ATGCGCCGATCGTGGGGCCGCCTGTTAA--TTA-GATCCACCACGTAACGCAGCTGGTCC 21245 ||||| || |||| || | | || | ||| || |||| | | |||||||| Sbjct 368 ATGCGACGGTCGTTCGGATTCGTCTTCAGCTTATGAATCACCTCTGCA---AGCTGGTCG 424 Query 21246 ACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCAC 21305 || ||||| || ||||| ||||| | | |||||| || || || || | |||| Sbjct 425 ACGCCCTGGCCGGTGTAGTCGGCGTGCATCGTCGTGTACTTTGCGCCGAAGTGGCGCCAC 484 Query 21306 TGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGA-AGCCCTGCGCCGC 21364 ||||| ||||||||||| || || || || | || | |||| | | ||| | Sbjct 485 TGGAAACCGTACACCGGTCCGAGGTCTCCGGCTTCACGATGACCGAGACCAATGC-TTTC 543 Query 21365 CAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGT 21424 | | | | ||||| | | ||||| ||||| | ||| | | ||| | Sbjct 544 GAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGATGCCCTTGTCCTGCAGGGTCTT 603 Query 21425 GGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACAC 21484 || || |||| || ||||| ||||||| || |||||| | ||||| | ||| ||||| Sbjct 604 GGCGTTGGTGTCACCACTGATGAACCACAACAGCTCCTCTGCAACGCCGCGCCAGAACAC 663 Query 21485 CCTTTTGGTGGTTAACAGAGGAAA 21508 | |||||| |||| || ||||| Sbjct 664 GCGTTTGGTCGTTAGAAGTGGAAA 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427685926014960