Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18 178 2e-39 seq26 161 1e-34 seq683 109 8e-19 >seq18 Length=85926 Score = 178 bits (196), Expect = 2e-39 Identities = 381/563 (68%), Gaps = 11/563 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || ||||| |||||||| || ||||| || | || ||||| || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| || ||||| || |||||||| || |||||||| || || ||| || || ||| Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGA-GCAGAAGGATCCA 69153 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||| || || || || |||||||| |||| | ||| || | |||| | Sbjct 69152 GAGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGC-G 69094 Query 50131 TCATGTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 | | || ||||| ||||||| | ||||||||| | |||||||| || || || Sbjct 69093 ACGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTC 69034 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 || || | || | ||| || || | || || | || || || || | || Sbjct 69033 AATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAG 68974 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 |||| ||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 68973 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGC 68914 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCG 50364 ||| | | |||||| || | | || ||||| || | ||||| || || || ||| Sbjct 68913 CTCAGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCG 68856 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 |||||||| ||||||||||| | ||||| || || |||| || ||| || || Sbjct 68855 TCACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATAGCGCTCATTGTCCGTGAGG 68796 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 || ||||| || |||| || | | ||| | || || | ||||| || ||| Sbjct 68795 TTGTTCCAGTCCTTGAGGTCGTGCACCAGATCAATCTCCTCGGCCGTCCAGAAGCTCGCC 68736 Query 50485 TCTGCCTTTTTATACATATTCCA 50507 || ||||| || ||||| | ||| Sbjct 68735 TCGGCCTTCTTGTACATCTGCCA 68713 >seq26 Length=77529 Score = 161 bits (178), Expect = 1e-34 Identities = 381/566 (67%), Gaps = 17/566 (3%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || ||||| |||||||| || ||||| || | || || ||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | |||| |||||||| ||||||||||| || ||||| || || || ||| || || || Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGGAGCCC 8076 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC------TG 50124 || |||||||| || || || || || ||||| |||| | ||| || ||| | Sbjct 8077 GAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCG 8135 Query 50125 GCGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 |||| ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 8136 GCGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGT 8192 Query 50184 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 50243 || || || | || | ||| || || | || || | || || || || | Sbjct 8193 CTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 8252 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 || ||||| || || || ||||| || ||||| ||||| || |||||||| || | Sbjct 8253 CAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACG 8312 Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATT 50361 ||||| | | |||||| || | | || ||||| || | || || || || || Sbjct 8313 CGCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATG 8370 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 ||||||||||| ||||| ||||| | || || || || || | |||||| || Sbjct 8371 CCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTG 8430 Query 50422 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 50481 || || ||||| || |||| || | | ||| | ||||| | ||||| || Sbjct 8431 AGGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTC 8490 Query 50482 GCCTCTGCCTTTTTATACATATTCCA 50507 ||||| ||||| || ||||| | ||| Sbjct 8491 GCCTCGGCCTTCTTGTACATCTGCCA 8516 >seq683 Length=21216 Score = 109 bits (120), Expect = 8e-19 Identities = 417/652 (64%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 |||||| || | ||| ||||| ||||| |||||||| || ||||| | || || Sbjct 19767 CCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAA 19826 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | || | ||| |||||| || ||||| || || ||||||||| | | Sbjct 19827 CAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAA 19886 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||||| | ||||||||||| | ||| || || | ||| ||| ||| || || Sbjct 19887 GATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACC 19946 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||| || | ||| | || |||| ||| | || | | ||| || | || || || || Sbjct 19947 CTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGA 20006 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 80219 | || || || ||| |||||| |||||||||| || | | ||| Sbjct 20007 CGAGCCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACC 20066 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || ||| || ||||| ||||||| | || | ||| || ||||||||||| Sbjct 20067 GATGCCGCCGGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGCCCTC 20126 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || || || ||||| ||| || || || |||| || |||| || || Sbjct 20127 GATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCC 20186 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACG 80398 ||| ||||| | || || | |||||||| || | ||| |||| ||| | ||||| Sbjct 20187 CGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA-CTCGTACG 20245 Query 80399 TCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 |||| | || | || || || | || || || || ||||| || | | ||| | Sbjct 20246 TCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCT 20305 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 |||| || | || ||| |||| | | || || || || || || | || | Sbjct 20306 GCTGCGGGCGCTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCT 20365 Query 80519 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 | || ||||| |||| ||| ||| || || |||| || || ||||||| Sbjct 20366 TGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTGGATGATCGCCGAGTT 20417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718113680874280