Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18 179 5e-40 seq26 156 6e-33 seq683 107 3e-18 >seq18 Length=85926 Score = 179 bits (198), Expect = 5e-40 Identities = 320/461 (69%), Gaps = 11/461 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || ||||| |||||||| || |||||||| | || | ||| || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | |||| || ||||| || |||||||| || |||||||| || || ||| || |||||| Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGA-GCAGAAGGATCCA 69153 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| || || || ||||||||||| | || | ||| || | | || | | Sbjct 69152 GAGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGC-G 69094 Query 42236 TCATGTAT----CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | | | |||||| ||||||| | ||||||||| | |||||||| || || || Sbjct 69093 ACGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTC 69034 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || | || | ||| || || | || || | || || || || | || Sbjct 69033 AATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAG 68974 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 |||| || || || ||||| || ||||| ||||| || |||||||| || | || Sbjct 68973 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGC 68914 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCG 42469 ||| | ||||| || || | | || ||||| || | |||||||| || || ||| Sbjct 68913 CTCAGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCG 68856 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||||| ||||||||||| | ||||| || || ||||| Sbjct 68855 TCACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATA 68815 >seq26 Length=77529 Score = 156 bits (172), Expect = 6e-33 Identities = 394/590 (67%), Gaps = 17/590 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || ||||| |||||||| || |||||||| | || | ||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | |||| |||||||| ||||||||||| || ||||| || || || ||| || || || Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGGAGCCC 8076 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC------CG 42229 || |||||||| || || || ||||| ||||| | || | ||| || ||| || Sbjct 8077 GAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCG 8135 Query 42230 GCAC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 || | ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 8136 GCGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGT 8192 Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || || || | || | ||| || || | || || | || || || || | Sbjct 8193 CTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 8252 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 || ||||| || || || ||||| || ||||| ||||| || |||||||| || | Sbjct 8253 CAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACG 8312 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATT 42466 ||||| | ||||| || || | | || ||||| || | || ||||| || || Sbjct 8313 CGCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATG 8370 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526 ||||||||||| ||||| ||||| | || || || || || || |||| || Sbjct 8371 CCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTG 8430 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | || ||||| || |||| || | | ||| | ||||| | ||||| || Sbjct 8431 AGGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTC 8490 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || ||||| || ||||| | ||| | || | | ||||| ||||| Sbjct 8491 GCCTCGGCCTTCTTGTACATCTGCCACACTTCGTTCTCCTGAATCGGGAA 8540 >seq683 Length=21216 Score = 107 bits (118), Expect = 3e-18 Identities = 452/711 (64%), Gaps = 2/711 (0%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| ||||| | ||| | || || ||||| || || | | | Sbjct 19708 TCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCATTGGGGCAGAAGAGGCTC 19767 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| || | | | ||||| ||||| |||||||| || ||||| | || || Sbjct 19768 CACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAAC 19827 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | || | ||| |||||| || ||||| || || ||||||||| | | Sbjct 19828 AGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAG 19887 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||| | ||||||||||| | ||| || || | ||| || ||| || ||| Sbjct 19888 ATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCC 19947 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | ||| | || |||| ||| | || | | ||| || | || || || || Sbjct 19948 TGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGAC 20007 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 | || || || ||| |||||| |||||||||| ||| | | ||| Sbjct 20008 GAGCCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCG 20067 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 || || || ||| || ||||| ||||||| | || | ||| || ||||||||||| Sbjct 20068 ATGCCGCCGGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCG 20127 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 || || ||| ||||| ||| || || || |||| || |||| || ||| Sbjct 20128 ATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCC 20187 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGT 72482 || ||||| | || || | |||||||| || | ||| |||| ||| | |||||| Sbjct 20188 GCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA-CTCGTACGT 20246 Query 72483 CTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 ||| | || | || || || | || || || || ||||| || | | ||| || Sbjct 20247 CTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTG 20306 Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 ||| || | || ||| |||| | | || || || || || || | || || Sbjct 20307 CTGCGGGCGCTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTT 20366 Query 72603 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 || ||||| |||| ||| ||| || || |||| || || |||| || Sbjct 20367 GAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTGGATGATCGCCGAGTT 20417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670994259100520