Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq1125 167 1e-36 seq1291 120 1e-22 >seq1125 Length=14513 Score = 167 bits (184), Expect = 1e-36 Identities = 338/498 (68%), Gaps = 13/498 (3%) Strand=Plus/Plus Query 66744 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG 66803 |||| || ||||| ||||||||||| || || || ||| | || || || | Sbjct 9132 GCCGCGTCGTGGAGATCTACGGCCCGGAGAGCTCGGGCAAGACGACGCTCGCGCTGAGCA 9191 Query 66804 CGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCC 66863 | || | |||||| || || ||| | ||| | ||||||||| ||||| || Sbjct 9192 GCATCGCGCAGGCGCAGCAGCAGGGCGGCGTCTGCGCGTTCATCGACGCCGAGCATGCCA 9251 Query 66864 TGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 66923 | ||| | | ||||||||| |||||| || ||| ||||| | ||| | |||| Sbjct 9252 TCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGACGAGCTCTACATCTCCCAGC 9311 Query 66924 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 66983 | ||| | ||||||||||| || ||||||| ||| ||||| ||| ||| || || Sbjct 9312 CCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCTCGTGCGGTCGGGC--GCCGT 9369 Query 66984 C--CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGA 67041 | | | |||||||| ||| ||||| || || ||||||||||||||||| |||||||| Sbjct 9370 CGACGTGGTCGTCGTCGACAGCGTGGCCGCGCTCGTGCCGCGCGCCGAGCTGGAAGGCGA 9429 Query 67042 CATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCT 67101 || || ||| || ||| ||||| ||||| |||||| ||||| |||||||||| Sbjct 9430 GATGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCT 9489 Query 67102 CACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 67158 ||| ||| | | || |||| || ||| | ||| | |||||| | ||| | Sbjct 9490 CACGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCA 9546 Query 67159 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAG 67218 ||| | |||| | | || |||| || ||| ||| ||||||| | ||| || | Sbjct 9547 GAAAGTGGGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCG 9603 Query 67219 GTTCTACGCCTCAGTCCG 67236 | |||||| || ||||| Sbjct 9604 CTACTACGCGTCCGTCCG 9621 >seq1291 Length=13138 Score = 120 bits (132), Expect = 1e-22 Identities = 236/347 (68%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 66989 GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGG 67048 |||||||| ||| ||||| || || ||||||||||||||| | |||||||| || || Sbjct 8041 GTCGTCGTCGACAGCGTGGCCGCGCTTGTGCCGCGCGCCGAGTTGGAAGGCGAGATGGGC 8100 Query 67049 GACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGC 67108 ||| || ||| ||||| ||||| |||||| ||||| ||||||||||||| ||| Sbjct 8101 GACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGC 8160 Query 67109 ACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 67165 | | || |||| || ||| | ||| | |||||| | ||| |||| || Sbjct 8161 TCACTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCAGAAAGTC 8217 Query 67166 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTAC 67225 |||| | | || |||| || ||| ||| ||||||| | ||| || | | |||| Sbjct 8218 GGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCGCTACTAC 8274 Query 67226 GCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 67285 || || ||||| | || | || |||| || | || || ||||| ||| ||| Sbjct 8275 GCGTCCGTCCGGCTCGACATTCGCCGCAAGGCGGCGATCAAAGAGGGCGACAAGGTCGTC 8334 Query 67286 GGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 67332 |||||| | | || || || | |||||||||||| || |||| Sbjct 8335 GGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGCGTCGCC 8381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242803263742724