Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq5268 163 2e-35 seq757 152 3e-32 seq1466 82.4 5e-11 >seq5268 Length=2107 Score = 163 bits (180), Expect = 2e-35 Identities = 405/600 (68%), Gaps = 21/600 (4%) Strand=Plus/Plus Query 25373 GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 25431 ||| |||| ||| || ||||| | | |||| | | | | |||||| ||| || |||| Sbjct 52 GTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGAACCTTGAGGGGTT 110 Query 25432 CTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTA 25491 | || || ||||| || | ||||||||| || | ||||| | || || |||| | Sbjct 111 CGACATGGTCCAGATAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGGA 170 Query 25492 GCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTA 25551 | || ||||| | || |||| ||| | ||| |||||| |||||||| ||||| | Sbjct 171 GTCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGTTGAAGGGCA 230 Query 25552 CCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTC 25611 | |||| ||||||||| | || | ||| || | || ||||| ||||| |||| Sbjct 231 CGCCGAGCCCCATGTCGGCT-GAGCGCTGATACATTTGGCACGATAGCTCACCGTCCGCG 289 Query 25612 ACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAG-TCTTTAGG 25670 ||||||||||| || | ||| ||| || || || || || | ||| || || Sbjct 290 ACGTAAAACTGGCAGAACATGTGGCAGGGGGGCAGTGCCAT-CTCCTTAAGATCGGCCGG 348 Query 25671 GTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGGTTGTC----CCTGATAAGATCC 25725 |||||| || ||| ||| |||| | ||| ||| | | ||| || || | ||| Sbjct 349 GTTCCATGCTGACATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGCTTATGA-ATCA 407 Query 25726 GCGGTGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 25784 | | ||| ||||| || || ||| || | |||||| || ||| |||||| Sbjct 408 CC-----TCTGCAAGCTGGTCGACGCCCTGGCCGGTGTAGTCGGCGTGCATCGTCGTGTA 462 Query 25785 CTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCT 25844 || ||| ||||| | | ||||||||| |||||||||||||| |||||||| |||| | Sbjct 463 CTTTGCGCCGAAGTGGCGCCACTGGAAACCGTACACCGGTCCGAGGTCTCCGGCTTCACG 522 Query 25845 GTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTAC 25904 || | | || | | || | | | || | || |||||| | |||||||| || | Sbjct 523 ATGACCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGAT 582 Query 25905 CCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 ||||| || | || | || |||| ||| ||| || |||| |||||||| ||||||| Sbjct 583 GCCCTTGTCCTGCAG-GGTC-TTGGCGTTGGTGTCACCACTGATGAACCACAACAGCTCC 640 >seq757 Length=19743 Score = 152 bits (168), Expect = 3e-32 Identities = 395/597 (66%), Gaps = 15/597 (3%) Strand=Plus/Minus Query 25373 GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 25431 ||| |||| ||| || ||||| | | |||| | | | | ||||| ||| || || | Sbjct 19494 GTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGGACCTTGAGGGGCT 19436 Query 25432 CTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTA 25491 | || ||||||||||| | ||||||||| || | ||||| | || || |||| | Sbjct 19435 CGACATGATCCAGGTAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGCA 19376 Query 25492 GCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTA 25551 |||| ||||| | || |||| ||| | ||| |||||| |||||||| ||||| | Sbjct 19375 GCCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGCGCGTAGCTCGCGATGTTGAAGGGCA 19316 Query 25552 CCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTC 25611 | |||| |||||||| | || | ||| || | ||| || || ||||| |||| Sbjct 19315 CACCGAGACCCATGTCGGCT-GAGCGCTGATACATCTGGCAAGACAGCTCACCGTCCGCG 19257 Query 25612 ACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGG 25671 ||||||||||| || | ||| || || || || || || | || ||| Sbjct 19256 ACGTAAAACTGGCAGAACATGTGACAGGGGGGCAGTGCCATCTCCTTGAGATCGGCCGGG 19197 Query 25672 TTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCCC-----TGATAAGATCC 25725 ||||| || ||| ||| |||| | ||| | || || ||| ||| || || Sbjct 19196 TTCCATGCTGACATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGTTTGAGAATCACC 19137 Query 25726 GCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTAC 25785 ||| ||||| || || ||| |||| |||||| || ||| ||||||| Sbjct 19136 TCGGCA------AGCTGGTCGACGCCCTGACCCGTGTAGTCGGCGTGCATCGTCGTGTAC 19083 Query 25786 TCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTG 25845 | ||| ||||| | | ||||||||| |||||||||||||| |||||||| |||| | Sbjct 19082 TTTGCGCCGAAGTGGCGCCACTGGAAGCCGTACACCGGTCCGAGGTCTCCGGCTTCACGA 19023 Query 25846 TGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACC 25905 || | | || | | || | | | || | || |||||| | |||||||| || | Sbjct 19022 TGACCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGATG 18963 Query 25906 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 ||||| || ||| |||| ||| ||| || |||| |||||||| ||| ||| Sbjct 18962 CCCTTGTCCTGCAGCGTCTTGGCGTTGGTGTCACCACTGATGAACCACAACAGTTCC 18906 >seq1466 Length=11765 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 44399 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACATGCGGAGCCG 44456 || ||||| ||||||||||| || |||| |||||| || ||||| ||||| || Sbjct 1095 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACCA 1152 Query 44457 TCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCC-GACCTCATCATC 44515 ||| | ||||||||||||||| ||| || | | || || |||||| ||||||||||| Sbjct 1153 TCCGCAACCAGGAGGACATGCCGTTCAACGACCAGGGCGT-GTGCCCGGACCTCATCATG 1211 Query 44516 AACCCCCACGCCTTTCC 44532 ||||| |||| ||| || Sbjct 1212 AACCCGCACGGCTTCCC 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340065979457721