Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq165 196 8e-46 seq43 181 2e-41 seq2532 174 2e-39 seq1545 170 3e-38 >seq165 Length=40241 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 38097 CGCCAAGCGTCATCGCAAGGTTCTCCGCGATAACATCCAGGGTATCACGAAGCCCGCTAT 38038 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| ||||||||| |||| || || |||| || |||| Sbjct 38037 CCGTCGTTTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 37978 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| ||||||| ||| || |||| ||| || | || || || Sbjct 37977 TCGTGGCGTGCTCAAGGTCTTCCTTGAGAATGTGATCCGTGACTCTGTTACGTACACGGA 37918 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| |||||||||||||| ||||||| |||| ||||| | || || || || Sbjct 37917 GCACGCTCGCCGTAAGACTGTCACGGCCATGGACGTCGTGTATGCCCTTAAGCGCCAGGG 37858 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||| ||||| || ||||| Sbjct 37857 TCGCACGCTTTACGGTTTCGGCGGTTAA 37830 >seq43 Length=65357 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || ||||||||||| || || |||||||| || || Sbjct 1242 CGCCAAGCGTCATCGCAAGGTTCTCCGTGATAACATCCAGGGCATTACCAAGCCTGCCAT 1301 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||||||||| || ||||||||| |||||||| || |||| || || | Sbjct 1302 CCGCCGACTGGCTCGTCGTGGCGGCGTCAAGCGTATCTCTGGACTGATCTACGAGGAAAC 1361 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| ||||||| ||| || || | ||| || || ||| ||||| Sbjct 1362 TCGTGGCGTCCTCAAGGTCTTCCTTGAGAATGTGATTCGCGATTCTGTCACCTACACCGA 1421 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| ||||| ||||||| |||| ||||| | || || || || Sbjct 1422 GCACGCTCGCCGCAAGACAGTCACTGCCATGGACGTCGTGTATGCTCTCAAGCGCCAGGG 1481 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || || || ||||| Sbjct 1482 TCGTACTCTTTACGGCTTCGGCGGTTAA 1509 >seq2532 Length=6590 Score = 174 bits (192), Expect = 2e-39 Identities = 205/275 (75%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 6064 CGCTAAGCGTCATCGCAAGGTC-CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCA 6006 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| |||||||||||||| ||||||||| |||| || || |||| || |||| Sbjct 6005 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGA 5946 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| ||| | | ||| || | Sbjct 5945 CGCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGG 5886 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| |||||||| ||||| ||||||| |||| || || | || ||||| | Sbjct 5885 AGCACGCCCGCCGTAAGACGGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGG 5826 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 |||| | | | || ||||| || ||||| | ||| Sbjct 5825 GCCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 5791 >seq1545 Length=11246 Score = 170 bits (188), Expect = 3e-38 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| || |||||||| || ||||||||||| || || Sbjct 10720 CGCTAAGCGTCATCGCAAGGTTCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 10661 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 10660 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 10601 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| ||| | | ||| || || Sbjct 10600 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGGA 10541 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| | ||||| |||| || || | || ||||| || Sbjct 10540 GCACGCCCGCCGCAAGACGGTCACGGCTATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 10481 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 10480 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 10447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79059403517961