Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18 170 2e-37 seq26 149 8e-31 seq683 102 1e-16 >seq18 Length=85926 Score = 170 bits (188), Expect = 2e-37 Identities = 316/460 (69%), Gaps = 9/460 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || ||||| |||||||| || ||||| || | || ||||| || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| || |||||||| || |||||||| || || ||| ||||||| Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAG 69152 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33475 | |||||||| || || || || |||||||| | || | ||| || | | |||| | Sbjct 69151 AGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGC-GA 69093 Query 33476 CATGTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | | || ||||| ||||||| | ||||||||| | |||||||| || || || Sbjct 69092 CGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTCA 69033 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 || || | || | ||| || || | || || | || || || || | || Sbjct 69032 ATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAGC 68973 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||| ||||| || ||||| || ||||| ||||| || |||||||| || | ||| Sbjct 68972 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCC 68913 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGT 33709 || | | ||| || || | | || |||| || | ||||| || || || |||| Sbjct 68912 TCAGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCGT 68855 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 ||||||| ||||||||||| | ||||| || || ||||| Sbjct 68854 CACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATA 68815 >seq26 Length=77529 Score = 149 bits (164), Expect = 8e-31 Identities = 376/565 (67%), Gaps = 15/565 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || ||||| |||||||| || ||||| || | || || ||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| |||||||| ||||||||||| || ||||| || || || ||| || || | Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGGAGCCCG 8077 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC------CGG 33469 | |||||||| || || || || || ||||| | || | ||| || ||| ||| Sbjct 8078 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCGG 8136 Query 33470 CGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 ||| ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 8137 CGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTC 8193 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 || || || | || | ||| || || | || || | || || || || | Sbjct 8194 TCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGC 8253 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 || ||||| || || || ||||| || ||||| ||||| || |||||||| || | Sbjct 8254 AGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGC 8313 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTC 33706 ||||| | | ||| || || | | || |||| || | || || || || || | Sbjct 8314 GCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATGC 8371 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33766 |||||||||| ||||| ||||| | || || || || || || |||| || | Sbjct 8372 CGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGA 8431 Query 33767 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 | || ||||| || |||| || | | ||| | ||||| | ||||| || | Sbjct 8432 GGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTCG 8491 Query 33827 CCTCTGCCTTTTTATACATGTTCCA 33851 |||| ||||| || ||||| | ||| Sbjct 8492 CCTCGGCCTTCTTGTACATCTGCCA 8516 >seq683 Length=21216 Score = 102 bits (112), Expect = 1e-16 Identities = 418/656 (64%), Gaps = 10/656 (2%) Strand=Plus/Plus Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 |||||| |||| ||| ||||| ||||| |||||||| || ||||| | || || Sbjct 19767 CCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAA 19826 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| | || | ||| |||||| || ||||| || || ||||||||| | | Sbjct 19827 CAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAA 19886 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT----C 63372 ||||| | ||||||||||| | ||| || || | | || || || | || | Sbjct 19887 GATATCCGCGTGCCACGGTTCGAGGTACATCGCGA----ACGAGCCCTTTCGCTTGCCGC 19942 Query 63373 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63432 | ||||| || | ||| | || |||| ||| | || | | ||| || | || |||| Sbjct 19943 CACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGT 20002 Query 63433 TTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 63492 | || || || || ||| |||||| |||||||||| || | | Sbjct 20003 TCGACGAGCCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCA 20062 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 ||| || || || ||| || ||||| ||||||| | || | |||||| ||||| | Sbjct 20063 CACCGATGCCGCCGGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGC 20122 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 |||| || || || ||||| ||| || || || |||| || |||| | Sbjct 20123 CCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCG 20182 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63671 | ||||| ||||| | || || | |||||||| || | ||| || | ||| | | Sbjct 20183 TGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA-CTCG 20241 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 |||||||| | || | ||| || || | || || || || ||||| || | | | Sbjct 20242 TACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATC 20301 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || ||||| || | || ||| |||| | || || || || || || | Sbjct 20302 ATCTGCTGCGGGCGCTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGC 20361 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 || || || ||||| |||| ||| ||| || || |||| || || ||||||| Sbjct 20362 GTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTGGATGATCGCCGAGTT 20417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622812666765320