Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq1125 179 2e-40 seq1291 134 7e-27 >seq1125 Length=14513 Score = 179 bits (198), Expect = 2e-40 Identities = 396/594 (67%), Gaps = 21/594 (4%) Strand=Plus/Plus Query 65457 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACG 65516 |||| || ||||| ||||||||||| || || || ||| | || || || | Sbjct 9132 GCCGCGTCGTGGAGATCTACGGCCCGGAGAGCTCGGGCAAGACGACGCTCGCGCTGAGCA 9191 Query 65517 CGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCC 65576 | || | |||||| || || ||| | ||| | ||||||||| ||||| || Sbjct 9192 GCATCGCGCAGGCGCAGCAGCAGGGCGGCGTCTGCGCGTTCATCGACGCCGAGCATGCCA 9251 Query 65577 TGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 65636 | ||| | | ||||||||| |||||| || ||| ||||| | ||| | |||| Sbjct 9252 TCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGACGAGCTCTACATCTCCCAGC 9311 Query 65637 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 65696 | ||| | ||||||||||| || ||||||| ||| ||||| ||| ||| || || Sbjct 9312 CCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCTCGTGCGGTCGGGC--GCCGT 9369 Query 65697 C--CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGA 65754 | | | |||||||| ||| ||||| || || ||||||||||||||||| |||||||| Sbjct 9370 CGACGTGGTCGTCGTCGACAGCGTGGCCGCGCTCGTGCCGCGCGCCGAGCTGGAAGGCGA 9429 Query 65755 CATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCT 65814 || || ||| || ||| ||||| ||||| |||||| ||||| |||||||||| Sbjct 9430 GATGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCT 9489 Query 65815 CACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 65871 ||| ||| | | || |||| || ||| | ||| | |||||| | ||| | Sbjct 9490 CACGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCA 9546 Query 65872 GAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAG 65931 ||| | |||| | | || |||| || |||| ||| ||||||||| ||| || | Sbjct 9547 GAAAGTGGGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCG 9603 Query 65932 GTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGA 65991 | |||||| || ||||| | || | ||| ||||||||| | Sbjct 9604 CTACTACGCGTCCGTCCGGCTCGACAT--------TCGNNNNNNNNNNGGAAGGCGACAA 9655 Query 65992 GGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66045 || ||||||||| | | || ||||| | |||||||||||| || |||| Sbjct 9656 GGTCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGCGTCGCC 9709 >seq1291 Length=13138 Score = 134 bits (148), Expect = 7e-27 Identities = 239/347 (69%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 65702 GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGG 65761 |||||||| ||| ||||| || || ||||||||||||||| | |||||||| || || Sbjct 8041 GTCGTCGTCGACAGCGTGGCCGCGCTTGTGCCGCGCGCCGAGTTGGAAGGCGAGATGGGC 8100 Query 65762 GACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGC 65821 ||| || ||| ||||| ||||| |||||| ||||| ||||||||||||| ||| Sbjct 8101 GACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGC 8160 Query 65822 ACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 65878 | | || |||| || ||| | ||| | |||||| | ||| |||| || Sbjct 8161 TCACTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCAGAAAGTC 8217 Query 65879 GGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 65938 |||| | | || |||| || |||| ||| ||||||||| ||| || | | |||| Sbjct 8218 GGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCGCTACTAC 8274 Query 65939 GCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 65998 || || ||||| | || | || |||| || | || || ||||| ||| ||| Sbjct 8275 GCGTCCGTCCGGCTCGACATTCGCCGCAAGGCGGCGATCAAAGAGGGCGACAAGGTCGTC 8334 Query 65999 GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66045 |||||| | | || ||||| | |||||||||||| || |||| Sbjct 8335 GGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGCGTCGCC 8381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238170639409468