Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18 181 1e-40 seq26 152 7e-32 >seq18 Length=85926 Score = 181 bits (200), Expect = 1e-40 Identities = 410/610 (67%), Gaps = 11/610 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || || ||||| |||||||| || ||||| || | || | ||| || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| || |||||||| || |||||||| || || ||| || |||||| Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGA-GCAGAAGGATCCA 69153 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| || || || || ||||||||||| | || | ||| || | | |||| | Sbjct 69152 GAGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGC-G 69094 Query 32832 TCATGTAT----CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 | | | |||||| ||||||| | ||||||||| | |||||||| || ||||| Sbjct 69093 ACGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTC 69034 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 || || | || | ||| || || | || || | || || ||||| | || Sbjct 69033 AATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAG 68974 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 |||| ||||| || ||||| || ||||| || || || ||||||||||| | || Sbjct 68973 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGC 68914 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCG 33065 ||| | | ||| || || | | || |||| || | ||||| || || || ||| Sbjct 68913 CTCAGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCG 68856 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125 |||||||| ||||||||||| | ||||| || || ||||| || | || || Sbjct 68855 TCACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATAGCGCTCATTGTCCGTGAGG 68796 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 || ||||| || |||| || | | ||| | || || | ||||| || ||| Sbjct 68795 TTGTTCCAGTCCTTGAGGTCGTGCACCAGATCAATCTCCTCGGCCGTCCAGAAGCTCGCC 68736 Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 33245 || ||||| || ||||| | ||| | || | | ||||| ||||| | ||| || | Sbjct 68735 TCGGCCTTCTTGTACATCTGCCACACCTCGTTCTCCTGAATCGGAAAGAGAACGAAGCGG 68676 Query 33246 TTTGGATTTT 33255 || || |||| Sbjct 68675 TTGGGGTTTT 68666 >seq26 Length=77529 Score = 152 bits (168), Expect = 7e-32 Identities = 379/566 (67%), Gaps = 17/566 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || || ||||| |||||||| || ||||| || | || | ||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| |||||||| ||||||||||| || ||||| || || || ||| || || || Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGGAGCCC 8076 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC------CG 32825 || ||||| || || || || ||||| ||||| | || | ||| || ||| || Sbjct 8077 GAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCG 8135 Query 32826 GCGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 |||| ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 8136 GCGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGT 8192 Query 32885 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 32944 ||| || || | || | ||| || || | || || | || || ||||| | Sbjct 8193 CTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 8252 Query 32945 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCT 33004 || ||||| || || || ||||| || ||||| || || || ||||||||||| | Sbjct 8253 CAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACG 8312 Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATT 33062 ||||| | | ||| || || | | || |||| || | || || || || || Sbjct 8313 CGCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATG 8370 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 ||||||||||| ||||| ||||| | || || || || || || |||| || Sbjct 8371 CCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTG 8430 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 || || ||||| || |||| || | | ||| | ||||| | ||||| || Sbjct 8431 AGGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTC 8490 Query 33183 GCCTCTGCCTTTTTATACATATTCCA 33208 ||||| ||||| || ||||| | ||| Sbjct 8491 GCCTCGGCCTTCTTGTACATCTGCCA 8516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633495159249200