Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq456 100 2e-16 seq683 95.1 1e-14 seq7513 93.3 4e-14 seq7289 89.7 4e-13 seq14351 87.8 2e-12 >seq456 Length=26154 Score = 100 bits (110), Expect = 2e-16 Identities = 257/387 (66%), Gaps = 11/387 (3%) Strand=Plus/Minus Query 130012 GCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCT 130071 || ||||| || ||||| || | ||| || | ||||| |||||| |||| ||| || || Sbjct 6335 GCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGAGCA 6276 Query 130072 TTTCTATC---CTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCG 130128 | || |||| ||| ||| || || || ||||| ||| | ||||| ||| Sbjct 6275 ---CGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCCGCG 6219 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACG 130185 |||||||| || | || || || | | |||||| || || ||| || ||||| ||| Sbjct 6218 TGCCACGGCTCGAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACG 6159 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245 | |||| | | | |||| | || || | ||| | | | | |||||| | || |||||| Sbjct 6158 TAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGTCCGTTCGACGAGCCGTTC 6099 Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305 |||| ||| | | || || | ||| || ||||| | ||| ||||||||| Sbjct 6098 GTGCCGCGGATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCCGCCG 6039 Query 130306 CCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTC 130364 | | || || || | ||||| | || | ||||| || || ||||| |||| ||| Sbjct 6038 GCCCACTTGGAGATGCAGGCGCACT-GCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 5980 Query 130365 TTCTTTAATGTTTAGGAGGAAACACGA 130391 || || ||| || ||||| || || Sbjct 5979 GTCCTTCATGGCCAGCAGGAAGCAAGA 5953 >seq683 Length=21216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 256/387 (66%), Gaps = 11/387 (3%) Strand=Plus/Plus Query 130012 GCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCT 130071 || |||||||| ||||| || | ||| || | ||||| |||||| |||| ||| || || Sbjct 19780 GCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGGGCG 19839 Query 130072 TTTCTATC---CTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCG 130128 | || |||| ||| ||| || || || ||||| ||| | || || ||| Sbjct 19840 ---CGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATATCCGCG 19896 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACG 130185 ||||||||||| | || || || | | |||||| || || ||| || ||||| ||| Sbjct 19897 TGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCACG 19956 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245 | |||| | | | ||| | || || | ||| | | | | ||||| | || |||||| Sbjct 19957 TAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGACGAGCCGTTC 20016 Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305 |||| || | | || |||| ||| || ||||| | ||| ||||||||| Sbjct 20017 GTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCCG 20076 Query 130306 CCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTC 130364 | | || || || | ||||| | || | ||||| || || ||||| |||| ||| Sbjct 20077 GCCCACTTCGAGATGCATGCGCACT-GCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTC 20135 Query 130365 TTCTTTAATGTTTAGGAGGAAACACGA 130391 || || ||| || ||||| || || Sbjct 20136 GTCCTTCATGGCAAGCAGGAAGCAAGA 20162 >seq7513 Length=1086 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || || || || ||| | ||||| || ||| |||| || || || || Sbjct 149 GTAAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAG 90 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | |||| | | ||| || |||| || || || || ||||||||||| || || || Sbjct 89 CCTTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCG 30 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAA 22361 ||||| || || || || || |||||||| Sbjct 29 GATCAGCAGCGCCTGATCTTCGCCGGCAA 1 >seq7289 Length=1152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || || || || ||| | ||||| || ||| |||| || || || || Sbjct 1004 GTAAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAG 1063 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || | | | ||| || |||| || || || || ||||||||||| || || || Sbjct 1064 CCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCG 1123 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAA 22361 ||||| || || || || || |||||||| Sbjct 1124 GATCAGCAGCGCCTGATCTTCGCCGGCAA 1152 >seq14351 Length=379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || || || ||||||||||| || || || ||||| || || || Sbjct 373 GACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTG 314 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | ||||| |||||| |||| || |||||||| || || Sbjct 313 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAG 254 Query 22408 GAATCCAC 22415 || || || Sbjct 253 GAGTCGAC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419639620629505