Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5262 154 3e-32 seq18 152 1e-31 seq26 141 2e-28 seq5206 125 1e-23 seq16745 102 2e-16 seq13 87.8 4e-12 seq17215 86.0 1e-11 >seq5262 Length=2108 Score = 154 bits (170), Expect = 3e-32 Identities = 446/676 (66%), Gaps = 24/676 (4%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || ||||||||||||||||||||||| | | | || ||||| | Sbjct 1312 TGCCTGTCGGTGCCCTTTCGGGTGGTTGGAAGATGAAGCTTGAGTTGGCCCGTGCCATGC 1253 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| | || ||||| |||||||| || |||||| |||| | ||||| Sbjct 1252 TCATGAAGGCTGATATTCTTCTGCTCGATGAGCCGACGAACCACTTGGATGTCCACAACG 1193 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 1192 TCAAGTGGCTCGAGGACTACCTGACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 1133 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||| || ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 1132 ACGACTCCGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGCA 1076 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 |||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 1075 AGCTGAAGACGTACAAGGGTAACCTTTCGGAGTTCGT--CAAGCAGAAGCCGGAGGCTAA 1018 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| || || ||||| ||||||||||| || || || Sbjct 1017 GACGTACTACGAGCTTGAGGCTGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 958 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| | || || || || | | | Sbjct 957 TGCCGATATCAAGAACAAGGGTAAGC-CGATCATT---CGCC-TGACGAA--CTGTACGT 905 Query 280108 ATCCCAA---TGGCCCCAACA-----TCT-TCAGCAGTGTCAACTCGCAGGTTTCTATGA 280158 | | | ||||| ||| || || || | ||| | | ||| | Sbjct 904 ACCAGTACCCTGGCCGTGACAAGCCGTCGATCCGCGATATCAGTGTGACGTGTTCGCTCG 845 Query 280159 ACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCC 280218 ||| || || | ||| |||| ||||| ||||| || ||||| || || ||||| | Sbjct 844 CCTCGCGTATCGCTGTTGTTGGCCCCAACGGTGCCGGCAAGTCGACTCTTATCAAGATGT 785 Query 280219 TGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGG 280278 |||| || || || |||||| || | || |||||||| || |||||| | | Sbjct 784 TGACGGGTGAAGTTGAGCCCACTGTCGGTACGGTCTGGAAGCACCCGGCCATGCGTTTCG 725 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | |||||||| |||||||| ||||||||||| ||| | ||| |||| || ||| | |||| Sbjct 724 CCTACGTCGCCCAGCACGCCTTCCACCACATTGAGGAGCACTTGGATATCACTGCCAACC 665 Query 280339 AATACATTCAGTGGCG 280354 | ||||| |||||||| Sbjct 664 AGTACATCCAGTGGCG 649 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| |||||||| | ||| || || ||| | Sbjct 1650 GGATCTCTGCAACTGCGAGTTCTCGCTCGCTTATGGTGGTATGATCCTCCTCAACAACGC 1591 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| | | | |||||||| |||| || ||||| |||||| || || ||||| Sbjct 1590 TCGCATGCGCCTGAAGCGTGGTCACCGTTACGGTCTGTGCGGTCCTAACGGTTGTGGTAA 1531 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||| ||||| | || |||||||| || || || ||| ||||| || Sbjct 1530 GTCGACGCTTATGCGTGCCATCTCCAAGGGTCAGCTCGAGGGCTTCCCT-ACGCAGGATG 1472 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 1471 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 1440 >seq18 Length=85926 Score = 152 bits (168), Expect = 1e-31 Identities = 536/828 (65%), Gaps = 32/828 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| || ||||| | ||||| ||||||| ||||| | | Sbjct 69530 TCGAAGAAGTTGGTCTTCCCCTGGAGCGAGATCATGTCCATCCAGTCGAATGGGTTCGAG 69471 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACA-AACTCCAG 251681 | ||||| ||||| |||||| || || | ||||| || ||| ||||| | Sbjct 69470 ACCTTGTAGATCTTGGACACGCCAAGCGCGTGGAGAAGACGGTCCGC-ACAGAACTCGAT 69412 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCAC 251737 ||||| | ||| || ||||||||||| |||| | || ||| | | ||| | Sbjct 69411 GTACTGGCACATGAGGGACGAGTTCATGCCGATCAGCTCCACCGGGAGCGAGT-CCTGA- 69354 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 | ||| ||||| ||| | | || || || | || | | | | | | | Sbjct 69353 --ACGAACTCCTTCTCGATCGAGACGGCATCGCGGATGATCTCGTGGATGCGCGACTCTG 69296 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCT 251854 |||||||| | ||||| |||||||| || | ||| || || | ||| || |||| Sbjct 69295 GTAGCTTGTTGGCAAGCTTCGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGGCCCT 69239 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | || || ||||| || || || | | ||||||||||| | ||||| ||| ||| Sbjct 69238 CATCACGCGAGATGAGTTCATTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGA 69179 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||| ||||| | ||| |||||||||||||| | | ||||||||| | | | || | Sbjct 69178 GCCAAAAGATCGAGCAGAAGGATCCAGAGAAGAAGATACCCTCGACGGCCGCAAAGGCGA 69119 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA--------ACTTCTGTGCCCATGC 252026 ||| |||||| |||||| | | ||||| ||| ||||| | ||||| Sbjct 69118 CAATGCGCTCCGCAAAC-----GCCGCGCGACGAGAGTCGCACCACTTCAGAGCCCAGTG 69064 Query 252027 TGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGC 252086 |||||||| || || || || || || || | || |||| ||| | Sbjct 69063 GGCCTTCTTCTGCACACAAGGAATGGTCTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGT 69004 Query 252087 ATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTT 252146 | ||||| |||| || |||| || || ||||||| |||||| |||||| ||| | Sbjct 69003 CTGGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGAT 68944 Query 252147 GAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTT 252206 | |||||| | | ||||| || || |||| | || || || ||||| Sbjct 68943 GGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCAGGGACCTGCACCTCGCTGCTGAAGTT 68884 Query 252207 GTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTT 252266 | || | ||| || | || ||||| || ||| | ||||| || | || | ||| Sbjct 68883 CATGGCGAGGTTTTCGTTGACAATGCCGTCACTGGCGGCAAAAAACGCGAGCACATGCTT 68824 Query 252267 GATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAG 252326 |||||| | ||||||| ||| |||| |||| |||||| | ||| || ||| Sbjct 68823 GATGAAATAGCGCTCATTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTGCACCAG 68767 Query 252327 AGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || || || |||||||||| | | | | |||||||||||||| Sbjct 68766 ATCAATCTCCTCGGCCGTCCAGAAGCTCGCCTCGGCCTTCTTGTACAT 68719 >seq26 Length=77529 Score = 141 bits (156), Expect = 2e-28 Identities = 386/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Plus Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCG 251856 |||||||| | ||||| |||||||| || | ||| || || | ||| || ||||| Sbjct 7936 AGCTTGTTGGCGAGCTTCGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGGCCCTCA 7992 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||||| |||||| || | | ||||| ||||| | ||||| ||| ||||| Sbjct 7993 TCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGC 8052 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | ||| ||||| || ||||| | | |||||||| | | | || ||| Sbjct 8053 CAGAAGATCGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACA 8112 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCATGCTGCCTTC 252033 | |||||| ||||||| | | |||| | |||| | ||||| |||||| Sbjct 8113 ATGCGCTCCGCAAACGCCGCGCGGCGCGAGTCGCACCACTTGAGAGCCCAGTGGGCCTTC 8172 Query 252034 TT-TCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 || | || ||| ||||| || || || || | || |||| ||| | | || Sbjct 8173 TTCTGCA--CGCAAGGGATGGTCTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGT 8230 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| || |||| || || || |||| ||| || |||||| ||| || | Sbjct 8231 CCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGA 8290 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 ||||| | | ||||| |||||| ||| | || || || ||||| | | Sbjct 8291 TCTGGAAGCCGTAGAAGCAACGCGCCTCCGGGACCTGCACCTCGCTGCTGAAGTTCATGG 8350 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || ||||| || ||| | |||||||| | || | | |||||||| Sbjct 8351 CGAGGTTCTCGTTGACAATGCCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGA 8410 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 ||| ||||| | ||| |||| |||| |||||| | ||| || ||| | Sbjct 8411 AGTAGCGCTCGTTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTGCACAAGATCGA 8467 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 ||||| | |||||||| | | | | |||||||||||||| Sbjct 8468 TCTCTTCGGCAGTCCAGAAGCTCGCCTCGGCCTTCTTGTACAT 8510 >seq5206 Length=2145 Score = 125 bits (138), Expect = 1e-23 Identities = 395/605 (65%), Gaps = 18/605 (3%) Strand=Plus/Plus Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || ||| | || ||||| |||||||| || |||||| |||| | |||||| ||| Sbjct 902 GCTGATATTCTTCTGCTCGATGAGCCGACGAACCACTTGGATGTCCACAACGTCAAGTGG 961 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || || || | ||| || | || |||||||| || ||||||||| Sbjct 962 CTTGAGGACTACCTGACGAGCCTCACGAACGTGACGTCGCTCATTGTGTCGCACGACTCT 1021 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCC 279938 || ||||| || | || ||| | |||||| ||||| ||| || | ||||| Sbjct 1022 GGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGCAAGCTGAAG 1078 Query 279939 AAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGCCTACT 279996 | | ||| || ||||| || | ||||| ||| || || ||||| | |||| Sbjct 1079 ACGTACAAGGGTAACCTTTCGGAGTTCGT--CAAGCAGAAGCCGGAGGCTAAGACGTACT 1136 Query 279997 ATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCA 280056 | || || ||| || || ||||| ||||||||||| || || || | | | Sbjct 1137 ACGAGCTTGAGGCTGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCTTGCCGATA 1196 Query 280057 TCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115 ||| | ||| || || | ||||| || | | | | || || | Sbjct 1197 TCAAGAACAAGGGTAAGC-CGATCATTCGTCTGACGAACTGCACGTACCAGTACCC---T 1252 Query 280116 GGCCCCAACA-----TCT-TCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 |||| ||| || || || | ||| | | | ||| | ||| || || Sbjct 1253 GGCCGTGACAAGCCGTCGATCCGCGATATCAGCGTGACGTGTTCGCTCGCCTCGCGTATC 1312 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | ||| | || ||||| ||||| || ||||| || || ||||| | |||| || || Sbjct 1313 GCTGTTGTCGGTCCCAACGGTGCCGGCAAGTCGACGCTTATCAAGATGTTGACGGGTGAA 1372 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || |||||| || | || |||||||| || |||||| | || |||||||| Sbjct 1373 GTTGAGCCCACTGTCGGTACGGTCTGGAAGCACCCGGCCATGCGTTTCGCCTACGTCGCC 1432 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| ||||||||||| ||| | ||| ||||||| ||| | ||||| ||||| ||| Sbjct 1433 CAGCACGCCTTCCACCACATTGAGGAGCACTTGGACATCACTGCCAACCAGTACATCCAG 1492 Query 280350 TGGCG 280354 ||||| Sbjct 1493 TGGCG 1497 Score = 93.3 bits (102), Expect = 9e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| |||||||| | ||| || || ||| | Sbjct 459 GGATCTCTGCAACTGCGAGTTCTCGCTCGCTTATGGTGGTATGATCCTCCTCAACAACGC 518 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| | | | |||||||| |||| || ||||| |||||| || || ||||| Sbjct 519 TCGCATGCGCCTGAAGCGTGGTCACCGCTACGGTCTGTGCGGTCCTAACGGTTGCGGTAA 578 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGA 279529 | || || ||||||||||| | || |||||||| || || || |||| | ||| Sbjct 579 GTCGACGCTTATGCGCGCCATCTCCAAGGGTCAGCTCGAGGGTTTCCCTACCCAGGATGA 638 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATC 279560 | | | ||| || | || |||||| || || Sbjct 639 GCTCAAGACGGTCTTCGTCGAGCACAACCTC 669 >seq16745 Length=311 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 67 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 8 Query 142563 CCCCAC 142568 |||||| Sbjct 7 CCCCAC 2 >seq13 Length=92411 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| ||||| |||| || || ||||| Sbjct 5953 ATCCGCGGTCTCTCAGGCGGACAGAAGGTCAAGCTTGTGATCGCCGCGGCGATGTGGGTG 6012 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | ||| || || |||| |||||||| || |||||||| || || |||| | |||||| Sbjct 6013 CGCCCGCATCTGCTCGTGCTCGACGAACCGACCAACTACCTCGATCGCGCGGCGCTGGGC 6072 Query 280833 GCTCTG 280838 || ||| Sbjct 6073 GCGCTG 6078 >seq17215 Length=301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||||| | || |||| | ||||||||||||||||||| Sbjct 78 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 19 Query 142564 CCCAC 142568 ||||| Sbjct 18 CCCAC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027609276439957