Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5262 165 2e-35 seq18 141 2e-28 seq5206 138 2e-27 seq26 104 5e-17 >seq5262 Length=2108 Score = 165 bits (182), Expect = 2e-35 Identities = 458/689 (66%), Gaps = 25/689 (4%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| || || || | Sbjct 624 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATATCCAA 683 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 684 GTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTG 743 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| |||| || | || ||||| | || ||| || ||||| Sbjct 744 CTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGAGTCGA 803 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || ||| || ||| | || | ||| ||||| | | || Sbjct 804 CTTGCCGGCACCGTTGGGGCCAACAACAGCGATACGCGAGGCGAGCGAACAC--GTCA-- 859 Query 333554 CAC-GTTGTCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT- 333608 ||| | | || ||| | || || || || |||| | || ||| ||| Sbjct 860 CACTGATATCGCGGATCGACGGCTTGTCACGGCCAGGGTACTGGTACGT-ACAGTTCGTC 918 Query 333609 AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || ||||| ||| || | ||| ||||| | | ||||| || ||||| ||| Sbjct 919 AGGCGAATGATCGGCTTACCCTTGTTCT---TGATATCGGCAAGGAAACCCGGCTCAGGG 975 Query 333666 AACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 333722 ||| | || || | | | | ||| ||| ||||||| || | || || | Sbjct 976 AACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTAGCCTCCGGCTTC 1032 Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 | ||| |||||||| || || || ||||||||| |||||||||| |||| ||||| Sbjct 1033 TGCTTGACGAACTCCGAAAGGTTACCCTTGTACGTCTTCAGCTTGCGGTTC---TCGTAG 1089 Query 333783 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 333842 ||||| || ||||| || | ||||||||| ||||||||||| ||||| || | || Sbjct 1090 TGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCGGAGTCGTGCGACACGATGAGCGAC 1149 Query 333843 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGA 333902 | |||| | | ||| | ||||||| || |||||| | ||||| ||| | Sbjct 1150 GTCACGTTCGTGAGGCTCGTCAGGTAGTCCTCGAGCCACTTGACGTTGTGGACATCCAAG 1209 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| || || || || | | || |||| |||||| ||||| || | Sbjct 1210 TGGTTCGTCGGCTCATCGAGCAGAAGAATATCAGCCTTCATGAGCATGGCACGGGCCAAC 1269 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | || ||||| ||||| || || ||||| Sbjct 1270 TCAAGCTTCATCTTCCAACCACCCGAAAG 1298 >seq18 Length=85926 Score = 141 bits (156), Expect = 2e-28 Identities = 545/841 (65%), Gaps = 24/841 (3%) Strand=Plus/Plus Query 242897 TGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTGA 242956 ||||| | ||||| |||||||| | ||| | ||| ||||| ||||||| || |||| Sbjct 68711 TGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACGGCCGAGGAGATTGATCTGG 68770 Query 242957 ACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 243015 ||| ||| || |||||| | || |||| ||| | || || |||||||||| Sbjct 68771 T-GCACGACCTCAAGGACTGGAAC---AACCTCACGGACAATGAGCGCTATTTCATCAAG 68826 Query 243016 CACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAAC 243075 || | || | ||||| || | | || || ||||| | ||||| || | ||| Sbjct 68827 CATGTGCTCGCGTTTTTTGCCGCCAGTGACGGCATTGTCAACGAAAACCTCGCCATGAAC 68886 Query 243076 TTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAAC 243135 || || || || ||| || |||||||| || || | | ||| | || | Sbjct 68887 TTCAGCAGCGAGGTGCAGGTCCCTGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATC 68946 Query 243136 GAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGATGAACAA 243195 || ||||| || || || | || || || ||| || || ||| | || || Sbjct 68947 GAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACG--TACATCA-AGGACCAG 69003 Query 243196 ---GAGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCA 243252 ||| ||| | ||| || ||| || || | |||||| || || || ||||| Sbjct 69004 ACGGAGAAGAACCACCTTCTCCGCGCGATTGAGACCATTCCTTGTGTGCAGAAGAAGGCC 69063 Query 243253 AAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCA---TTTGCTGAGCGTCTCGTCGCC 243309 | ||||||| ||||||| || | || | ||||| ||||| | |||||| Sbjct 69064 CACTGGGCTCTGAAGTGGTGCGACTCTCGTCGCGCGGCGTTTGCGGAGCGCATTGTCGCC 69123 Query 243310 TGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGG 243369 | | | ||| || ||||| | || || || |||||| | ||||||||||| | Sbjct 69124 TTTGCGGCCGTCGAGGGTATCTTCTTCTCTGGATCCTTCTGCTCGATCTTTTGGCTCAAG 69183 Query 243370 AACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGC 243429 || ||| | |||||||||||| | | || || || ||||| || || |||||| Sbjct 69184 AAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAATGAACTCATCTCGCGTGATGAGGGC 69243 Query 243430 CTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCAT--TC 243486 || ||| | |||| ||| || |||| || ||||| |||||||||||| || Sbjct 69244 CTCCACTGCGACTTCGCGTGC-CTGCTGTACTCGAAGCTTGCCAACAAGCTACCAGAGTC 69302 Query 243487 GAAACGG-TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 | || || | | |||||| || || || | ||| ||||| ||| || || Sbjct 69303 G---CGCATCCACGAGATCATCCGCGATGCCGTCTCGATCGAGAAGGAGTTCGTTCAGGA 69359 Query 243546 CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATT 243605 | | | || ||| || ||||||||||| |||||| | ||||||||||| || Sbjct 69360 CTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGTCCCTCATGTGCCAGTACATCGAGTT 69419 Query 243606 CGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACC 243664 | || ||||| || || ||||||||| || ||| | ||||| | ||||| Sbjct 69420 CTGTGCGGACCGTCTTCTCCACGCGCTTGGCG-TGTCCAAGATCTACAAGGTCTCGAACC 69478 Query 243665 CCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTG 243724 | || | || ||||| | || ||||| || ||||| || ||||||||||| ||||||| Sbjct 69479 CATTCGACTGGATGGACATGATCTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCGTG 69538 Query 243725 T 243725 | Sbjct 69539 T 69539 >seq5206 Length=2145 Score = 138 bits (152), Expect = 2e-27 Identities = 427/649 (66%), Gaps = 29/649 (4%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| | Sbjct 1522 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATGTCCAA 1463 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 1462 GTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTG 1403 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| |||| || | || ||||| | || ||| || || || Sbjct 1402 CTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGCGTCGA 1343 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || || || ||| | || | ||| ||||| || | | Sbjct 1342 CTTGCCGGCACCGTTGGGACCGACAACAGCGATACGCGAGGCGAGCGA-ACACG-----T 1289 Query 333554 CACGTTG---TCAAAGAT---TAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 333607 |||| || || ||| | || || || || |||| | | | || || Sbjct 1288 CACGCTGATATCGCGGATCGACGGCTTGTCACGGCCAGGGTACTGGTA-CGTGCAGTTCG 1230 Query 333608 T-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGG 333663 | || ||||| ||| || |||| ||||| | | ||||| || ||||| | Sbjct 1229 TCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCGGCAAGGAAACCCGGCTCAG 1173 Query 333664 GGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 333720 ||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 1172 GGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTAGCCTCCGGCT 1116 Query 333721 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 333780 || ||| |||||||| || || || ||||||||| |||||||||| |||| |||| Sbjct 1115 TCTGCTTGACGAACTCCGAAAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTCGT 1059 Query 333781 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840 | ||||| || ||||| || | ||||||||| || |||||||| |||||||| | Sbjct 1058 AGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAGCG 999 Query 333841 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAA 333900 ||| |||| | | ||| | ||||||| || |||||| | ||||| ||| | Sbjct 998 ACGTCACGTTCGTGAGGCTCGTCAGGTAGTCCTCAAGCCACTTGACGTTGTGGACATCCA 939 Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCAT 333949 ||||| |||||||| || || || || | | || |||| |||||| Sbjct 938 AGTGGTTCGTCGGCTCATCGAGCAGAAGAATATCAGCCTTCATGAGCAT 890 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 334182 GGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCG 334241 ||||| || || |||||||| || || |||||||| || || || ||||| ||| Sbjct 626 GGGAAACCCTCGAGCTGACCCTTGGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCG 567 Query 334242 TTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGA 334301 || || || |||||||||||||||| ||||||||||| | || | ||||| || Sbjct 566 TTAGGACCGCACAGACCGTAGCGGTGACCACGCTTCAGGCGCATGCGAGCGTTGTTGAGG 507 Query 334302 AGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 || || | |||||||| || || || || || || | || |||||| Sbjct 506 AGGATCATACCACCATAAGCGAGCGAGAACTCGCAGTTGCAGAGATCC 459 >seq26 Length=77529 Score = 104 bits (114), Expect = 5e-17 Identities = 292/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||||| | ||||||| | | ||| || || || | || || || ||| Sbjct 8126 TTTGCGGAGCGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 8067 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||| | ||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 8066 TGCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAG 8007 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| || || |||||||| ||| | |||| ||| || |||| || ||||| Sbjct 8006 CTCATCTCGCGTGATGAGGGCCTCCACTGCGACTTCGCGTGC-CTGCTGTACTCGAAGCT 7948 Query 243468 CCAGAACAAGCTACCATTCGAAACGGTCAAACAA---ATCATCACAGAAGCAGTTGAAAA 243524 | |||||||| || ||| || || || |||||| || || || | Sbjct 7947 CGCCAACAAGCTTCC---CGAGTCGCGCATCCACGAGATCATCCGTGACGCCGTCTCGAT 7891 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || ||||| ||| | ||| | | || |||||| ||||||||||| || Sbjct 7890 TGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTTGAGCTTATCGGCATGAACTCGTCCCT 7831 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||| || ||||| || || ||||||||| || | Sbjct 7830 CATGTGCCAGTACATCGAGTTCTGTGCGGACCGTCTTCTCCACGCGCTTGG-CGTGTCCA 7772 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | ||||| | |||||| || | | ||||| | || ||||| || || || | Sbjct 7771 AGATCTACAAGGTCTCGAACCCGTTCGATTGGATGGACATGATCTCGCTCCAGGGAAAGA 7712 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| |||||||| Sbjct 7711 CCAACTTCTTCGAGAAGCGTGT 7690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102635864759950