Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq260 114 1e-20 seq1223 109 4e-19 seq379 109 4e-19 seq54 102 6e-17 >seq260 Length=33942 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||||| ||| || ||||| | ||| |||||| |||| |||| | | Sbjct 16529 ACGGCCGGCGCCCACCGTCTGTGGTCGCACCGCAGCTACAACGCCAAGTTCCCGCTTCGT 16588 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 |||||||| ||| ||| |||| |||| ||| || |||| ||||| || | Sbjct 16589 GTGTTCCTCATGCTCTGCAACTCGATGGCCTTCCAGGGCAGCATCTTCGAGTGGTCGCGC 16648 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | | |||||||||| ||| |||||||||||||| || || ||||||| | Sbjct 16649 GACCACCGCGCTCACCACAAGGGCTCGGACACGACGGCCGATCCCCATAACGCCACGCGC 16708 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGT 108587 || |||| ||| ||||| |||| ||| ||||| | |||| ||||| |||| Sbjct 16709 GGCTTCTTCTTCGCGCACATGGGCTGGGTCATGGTTCGCAAGCACCCCAACGT 16761 >seq1223 Length=13642 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||||| ||| || ||||| | ||| |||||| |||| |||| | | Sbjct 794 ACGGCCGGCGCCCACCGTCTGTGGTCGCACCGCAGCTACAACGCCAAGTTCCCGCTTCGT 853 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 |||||||| ||| ||| |||| |||| ||| || |||| ||||| || | Sbjct 854 GTGTTCCTCATGCTCTGCAACTCGATGGCCTTCCAGGGCAGCATCTTTGAGTGGTCGCGC 913 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | | ||||||||| ||| |||||||||||||| || || ||||||| | Sbjct 914 GACCACCGTGCGCACCACAAGGGCTCGGACACGACGGCCGATCCGCATAACGCCACGCGC 973 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGT 108587 || |||| ||| ||||| |||| ||| ||||| | |||| ||||| |||| Sbjct 974 GGCTTCTTCTTCGCGCACATGGGCTGGGTCATGGTTCGCAAGCACCCCAACGT 1026 >seq379 Length=28718 Score = 109 bits (120), Expect = 4e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 108343 GGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGC-CAC 108401 ||| |||| | |||||||||| |||||| ||||| | ||| ||||||||| ||| Sbjct 251 GGGCTCGGCATCACGGCCGGCGCGCATCGGCTGTGGGCGCACCGCAGCTACAAGGCGCAC 192 Query 108402 CGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCC 108461 || ||| | | | ||||| ||| ||| |||| |||| ||| ||| ||| Sbjct 191 GGCATCGTGC-GCTTCTTCCTCATGCTCTGCAACTCGATGGCGAACCAGGGCACGATCTT 133 Query 108462 GCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACA 108521 || ||| | ||| ||| | || |||||||||||||| |||||| |||||||||| || Sbjct 132 CCACTGGTGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGTCGGCCGACCCGCA 73 Query 108522 CAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCC 108581 | || | | | || |||| ||| ||||| |||| ||||| | ||| |||||||| Sbjct 72 CGACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTCGTGAAGAAGGACCC 13 Query 108582 CGACGTGAT 108590 |||||| Sbjct 12 GCGCGTGAT 4 >seq54 Length=63204 Score = 102 bits (112), Expect = 6e-17 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 108347 TCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGC-CACCGCC 108405 |||| | |||||||||| |||||| ||||| | ||| ||||||||| ||| || Sbjct 62958 TCGGCATCACGGCCGGCGCGCATCGGCTGTGGGCGCACCGCAGCTACAAGGCGCACGGCA 63017 Query 108406 CCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAG 108465 ||| | | | ||||| ||| ||| |||| |||| ||| ||| ||| || Sbjct 63018 TCGTGC-GCTTCTTCCTCATGCTCTGCAACTCGATGGCGAACCAGGGCACGATCTTCCAC 63076 Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||| | ||| ||| | || |||||||||||||| |||||| |||| ||||| ||| || Sbjct 63077 TGGTGTCGCGACCACCGCGTGCACCACAAGTACTCGGACACGTCGGCGGACCCGCACGAC 63136 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 | | | || |||| ||| ||||| |||| ||||| | ||| |||||||| | Sbjct 63137 TCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTCGTGAAGAAGGACCCGCGC 63196 Query 108586 GTGAT 108590 ||||| Sbjct 63197 GTGAT 63201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381692412606888