Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq456 271 8e-68 seq26 167 2e-36 seq18 138 1e-27 >seq456 Length=26154 Score = 271 bits (300), Expect = 8e-68 Identities = 1134/1757 (65%), Gaps = 41/1757 (2%) Strand=Plus/Minus Query 152722 TGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAG 152781 |||| | || |||||||| || |||||||| ||||| ||| ||| ||||| | Sbjct 7528 TGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCATCGACG 7469 Query 152782 TCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGA 152841 | | | | |||||| | || | | || || | ||| |||||||| ||| Sbjct 7468 TGAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATGT 7409 Query 152842 AAGCGTTACGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGCGGTT 152900 | ||| |||||||||||||| || | || | | || ||| || |||||||| |||| Sbjct 7408 AGGCGCCGCGGTCGGCCGCCATGTCCAGCACGGCCTTCTGC-TTGATCTCCCACACGGTC 7350 Query 152901 TTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTG- 152959 |||||| | || || || || || | | |||||| | ||||| | || Sbjct 7349 TTGTACTTCTCCTTGACCGCGTCGGGGATCGCGCGCACGTTCTGCACCGAGCCGTGGTCA 7290 Query 152960 TGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGAT 153019 |||| | | ||| || | |||||||| | | | || | ||||| || | || Sbjct 7289 TGCAGGATCTG-GTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCAT 7231 Query 153020 CAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCT 153079 | ||||| ||| || | ||||||||| || | ||| || | || | ||| | Sbjct 7230 GAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGT 7171 Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 ||||| || || | || ||||| ||||| || || || || || | || |||||||| Sbjct 7170 CGTGAACGGCTCGATCGACTCGTTGTTGCCAAGAATCTGCGCGGTCGACGCCGTCGGCAT 7111 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCT 153198 | ||| | || || || || |||| ||||| | ||| || | | |||| | |||| Sbjct 7110 GGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGG-CCTTGAGCGCCG 7052 Query 153199 GCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGTACTGTAACACTCCTC 153255 ||| ||||| || |||||| | || || ||||||||||||||| || | || Sbjct 7051 CCCAGTCCCAGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCT 6992 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCAG 153314 || | || ||| || | | || ||||| | | |||| | || || | Sbjct 6991 TGCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGTGCTCCTTGG-CGAGCTCCATG 6933 Query 153315 CTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCT 153374 ||||| | ||| || |||| | || ||| ||| | || ||||| || || Sbjct 6932 GACGCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCC 6873 Query 153375 TCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCG 153434 || ||||||||| ||| || || || | || |||||||| |||||||| | |||| Sbjct 6872 TCGTCGCTCTCGAACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGACCCTGCACACCG 6813 Query 153435 ACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATT 153493 | |||||| || || || | |||||||||| ||| ||| | ||||| |||| || Sbjct 6812 ATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCCGGGATGGGGTAGTAGTT 6754 Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553 | ||||| | ||||| ||||||||| ||| || || || || | | || |||| Sbjct 6753 GATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACCTTGGTGATGTCGTAGAGCTTCTT 6694 Query 153554 GAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATT 153613 || ||| | ||| | |||||| | | | | || || || || ||||| || || Sbjct 6693 AAAGTCAAACGTCTTGTCGTCGTT-CACAAACTTGGA--CAGCGCGATGGACGCGAGGTT 6637 Query 153614 ACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGC 153672 || ||||| ||| || |||| || |||||| | | |||| ||| |||||||| Sbjct 6636 GCACACGGCGACCTCGTCTGGCGACG-TGTACTCGAGCACCTCGCAGCAAAGGTTGCTCG 6578 Query 153673 ATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732 | || ||| | || ||||| || ||||| ||||||| ||| ||| | |||| Sbjct 6577 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCA 6518 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCG 153789 ||||||| ||| ||||||| || | |||| ||| |||| || | ||||| Sbjct 6517 TGTACGGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAACC---AGAGCTGCTGCG 6461 Query 153790 CTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACT 153849 | || | | || || ||||||||| ||||||| | | |||||| ||| |||| Sbjct 6460 CGCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACT 6401 Query 153850 CGTCGCCGTAGCAGTCG-GCGAGG--CCGGGACACTGATGCGGACACATCAGCGACCACA 153906 ||||||| | |||| | | | ||||| | || | ||| || | || |||| Sbjct 6400 CGTCGCCCCA--CGTCGTGTAAAGCCCCGGGGC-CTCGTTCGGGCAGAAGAGGCTCCACT 6344 Query 153907 TATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGT 153966 ||| ||| | |||||| |||||| |||||||| | ||| | ||||| | || | Sbjct 6343 CGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGAT 6284 Query 153967 --CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGT-TTCAGATTGA-GCACGCTATAG 154022 || || | || | || || || || | | | || || | || | || | | || Sbjct 6283 CACGAGCACGATGGA--GCT-CGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AG 6228 Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCC 154079 ||||| |||||||| || || | ||| | || | | || || ||||| |||||| Sbjct 6227 ATGTCCGCGTGCCACGGCTCGAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCC 6168 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 || || |||| |||| || | | |||||| ||||| | ||| || | || ||| | | Sbjct 6167 TGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGTCCGTTCGAC 6108 Query 154140 GTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCA 154199 | |||||| || ||| | | | |||||| | | |||||| | || || Sbjct 6107 GAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCTCACACCG 6048 Query 154200 ATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCG 154259 ||||||||| | |||| || ||| ||||| | ||||| ||||||||| ||| Sbjct 6047 ATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCG 5988 Query 154260 ATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCC 154319 || ||||| | | | |||| ||| || || | | ||||| |||| || Sbjct 5987 ATCGAGTCGTCCTTCATGGCCAGCAGGAAGCAAGACGAGAGCTGCGGGCGCGGCGTGCCA 5928 Query 154320 GCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTT 154379 || ||| || || || |||||||||| || | |||| ||| |||||| Sbjct 5927 GCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTC 5868 Query 154380 TCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGC 154439 |||| ||| | ||||| || | ||| ||||||| |||||||| | | ||| ||| Sbjct 5867 TCGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGC 5808 Query 154440 TGCGGACGTTCGGCGAC 154456 ||||| || || ||||| Sbjct 5807 TGCGGGCGCTCCGCGAC 5791 >seq26 Length=77529 Score = 167 bits (184), Expect = 2e-36 Identities = 498/753 (66%), Gaps = 19/753 (3%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||||| || |||||||||||| | |||||||| |||||| || |||| || | Sbjct 8422 ACGAGCGCTACTTCATCAAGCACGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCA 8363 Query 52153 ACATTAACCTCATCGAGTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || |||||| | | || | |||||| | || | || | ||||||| | ||| Sbjct 8362 ACGAGAACCTCGCCATGAACTTCAGCAGCG--AGGTGCAGGTCCCGGAGGCGCGTTGCTT 8305 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 || || || | ||||||| | | ||| | ||| |||| ||||||||||| Sbjct 8304 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGGTGTATTCGCTGCTCATTGA 8245 Query 52271 GCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCC 52330 | || || || || ||| || || || ||| | ||| | | || Sbjct 8244 CACGTACATCAAGGACCAGACGGAGAAGAACCACCTTCTCCGCGCGATTGAGACCATCCC 8185 Query 52331 GTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCACGC 52389 ||||| | || ||||| || ||||| | |||||| ||| ||| | | || || Sbjct 8184 TTGCGTGCAGAAGAAGGCCCACTGGGCTCTCAAGTGGTGCGACTCGCGCCGC-GCGGCGT 8126 Query 52390 TGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTG 52449 | || |||||||| || |||||||| ||||||||| | || || || ||| ||| Sbjct 8125 TTGCGGAGCGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCT 8066 Query 52450 CCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGT 52509 | | ||||| | | || | | ||| | ||||||||||| | ||| |||||| Sbjct 8065 GCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGC 8006 Query 52510 TGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCG 52569 | || ||||| || || || || ||| ||||| |||||||| ||| || || || Sbjct 8005 TCATCTCGCGTGATGAGGGCCTCCACTGCGACTTCGCGTGCCTGCTGTACTCGAAGCTCG 7946 Query 52570 TGACCGAAAAATTG--GATTCGGACACGATCCT-GAGCATGTTCAAGGAGGCGGTGGCTA 52626 | | || || || ||| || ||| ||| || || || || || | | Sbjct 7945 CCAAC--AAGCTTCCCGAGTCGCGCA---TCCACGAG-ATCATCCGTGACGCCGTCTCGA 7892 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | || |||||||| | || | |||| ||||| ||||| | ||||||||| || Sbjct 7891 TTGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTTGAGCTTATCGGCATGAACTCGTCCC 7832 Query 52687 CCATGTGCGAGTACATCGAGTT-TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 ||||||| ||||||||||||| |||| |||| ||||| | ||| || | | Sbjct 7831 TCATGTGCCAGTACATCGAGTTCTGTG-CGGACCGTCTTCTCCACGCGCTTGGCGTGTCC 7773 Query 52746 AAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| || ||| | |||| || ||||| || | ||| ||| || ||||| |||| || Sbjct 7772 AAGATCTACAAGGTCTCG-AACCCGTTCGATTGGATGGACATGATCTCGCTCCAGGGAAA 7714 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| ||||||||||| || |||||||| Sbjct 7713 GACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 7681 >seq18 Length=85926 Score = 138 bits (152), Expect = 1e-27 Identities = 488/749 (65%), Gaps = 15/749 (2%) Strand=Plus/Plus Query 52095 GAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGAAC 52154 ||||||||||| |||||||| ||| | ||||| || |||||| || |||| || ||| Sbjct 68809 GAGCGCTATTTCATCAAGCATGTGCTCGCGTTTTTTGCCGCCAGTGACGGCATTGTCAAC 68868 Query 52155 ATTAACCTCATCGAGTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACTTTT 52212 |||||| | | || | |||||| | || | || | ||||| | | ||| | Sbjct 68869 GAAAACCTCGCCATGAACTTCAGCAGCG--AGGTGCAGGTCCCTGAGGCACGCTGCTTCT 68926 Query 52213 ATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGC 52272 | || || | ||||||| | | ||| ||||| ||||| ||||||||||| Sbjct 68927 ACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACA 68986 Query 52273 AGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCCGT 52332 | || || || || ||| || || || ||| | ||| | | || | Sbjct 68987 CGTACATCAAGGACCAGACGGAGAAGAACCACCTTCTCCGCGCGATTGAGACCATTCCTT 69046 Query 52333 GCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAG-CGACACCGCCACGCTG 52391 | || | || ||||| || ||||| |||||||| ||| || | | || || | Sbjct 69047 GTGTGCAGAAGAAGGCCCACTGGGCTCTGAAGTGGTGCGACTCTCGTCGC-GCGGCGTTT 69105 Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||||| || ||||| || |||||||| | || || || || ||| | Sbjct 69106 GCGGAGCGCATTGTCGCCTTTGCGGCCGTCGAGGGTATCTTCTTCTCTGGATCCTTCTGC 69165 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||||| | || | | || | ||||| ||||| | ||| || || | Sbjct 69166 TCGATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAATGAACTC 69225 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || ||||| || || || || ||| ||||| |||||||| ||| || || | Sbjct 69226 ATCTCGCGTGATGAGGGCCTCCACTGCGACTTCGCGTGCCTGCTGTACTCGAAGCTTGCC 69285 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 | | | | || ||| || ||| ||| || || || || || | ||||| Sbjct 69286 AACAAGCTACCAGAGTCGCGCA---TCCACGAG-ATCATCCGCGATGCCGTCTCGATCGA 69341 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 |||||||| || || | |||| ||||| |||||| | ||||||||| || ||| Sbjct 69342 GAAGGAGTTCGTTCAGGACTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGTCCCTCAT 69401 Query 52691 GTGCGAGTACATCGAGTT-TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749 |||| ||||||||||||| ||| ||||| ||||| | ||| || | | ||| Sbjct 69402 GTGCCAGTACATCGAGTTCTGT-GCGGACCGTCTTCTCCACGCGCTTGGCGTGTCCAAGA 69460 Query 52750 ACTTCAACG-CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 || ||| | |||| || || || || | ||| ||| || ||||| |||| |||||| Sbjct 69461 TCTACAAGGTCTCG-AACCCATTCGACTGGATGGACATGATCTCGCTCCAGGGGAAGACC 69519 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| ||||||||||| || |||||||| Sbjct 69520 AACTTCTTCGAGAAGCGTGTGGGCGAGTA 69548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496155225931440