Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq456 131 2e-25 seq683 111 1e-19 >seq456 Length=26154 Score = 131 bits (144), Expect = 2e-25 Identities = 915/1446 (63%), Gaps = 57/1446 (4%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || || || || ||| | | ||||||||| | ||| | ||| | | Sbjct 5788 AAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCAC 5847 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| |||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 5848 GACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 5907 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || |||| ||| |||||| | || ||| | || || || || |||| Sbjct 5908 ACGCCGACGCTGTTTAACGCTGGCACGCCGCGCCCGCAGCTCTCGTCTTGCTTCCTGCTG 5967 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || ||||| || || | | ||||| | || Sbjct 5968 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCTGCATC 6027 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG- 123196 ||||| | | ||||||||| || |||| ||||||| || | | | | | || || Sbjct 6028 TCCAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATCCGCGCCACC--AACTCGT 6085 Query 123197 -CATCAGAAGCACCGACGGAATCGCCTC-CGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | |||| |||| ||| | ||| |||| | ||||| || || | ||| Sbjct 6086 ACATCCGCGGCACGAACGGC-TCGTCGAACGGACTCGTGCCGATGCTCCGCGTGTTCAAC 6144 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| |||| |||||||||||| || ||||| ||| || | ||||| || Sbjct 6145 GACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTAC 6204 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAA-ACGCAACATGGGGGC 123370 || || |||||||||| || | | ||| || | | | || | | | || || | Sbjct 6205 CTCGAGCCGTGGCACGCGGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGTAAC 6264 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 | | | || || ||| |||| ||||| | ||| | || ||| | || ||| Sbjct 6265 G-AGCTCCATCGTGCTCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAA 6323 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG--CTTG 123488 ||||| | | | |||||| |||| ||| | || ||||| || | ||||| ||| Sbjct 6324 GCGCGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTG-CCCGAACGAGGCCCCGGGGCTTT 6382 Query 123489 AG-CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAA 123547 | |||||| ||| | |||| || | | ||||| || |||||| || ||| Sbjct 6383 ACACGACGTGG--GGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCG 6440 Query 123548 ACAG-GTTAGTCAGGTTCCG---GCACGTGATTTG-TTCAAATTTATTATCGAAACACAA 123602 | | || | | |||| ||| | | || ||| || |||| | || Sbjct 6441 CGCGCGCAAGAC--GATCCGCGCGCAGCAGCTCTGGTTCGCG---ATCCTCGAGTCTCAG 6495 Query 123603 GTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG 123662 |||| || || |||||||||||||| ||||| ||| | |||||| | || | || ||| Sbjct 6496 ATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAG 6555 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 ||| | || || || | || || ||||||| ||| | |||| |||| || Sbjct 6556 CAGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGCGAGGTGCTCGAGTACA-CGTC 6614 Query 123723 GCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTT-GC-GTGAATCGTTG----CGT 123775 ||| || | || |||||||| || | || || || || || | ||| || Sbjct 6615 GCCAGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGA 6674 Query 123776 CGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG-- 123833 ||| || | || ||| | || | | |||| | ||| || || || || | | Sbjct 6675 CGACAA-GACG--TTTGACTTTAAGAAGCTCTACGACATCACCAAG---GTCGTGACGCG 6728 Query 123834 -AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTT---GGAGGAAGCGCGTTTGTC 123889 || ||||||| | ||||| | || | || || | ||||| | ||| Sbjct 6729 CAACCTGAACAAGGTCATCGACATCAACTACTACCCCATCCCGGAGGCCGAGCGCAGC-- 6786 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 || || ||| | ||| |||| | || | || || | ||||||||||| | | Sbjct 6787 -AACCTGCGCCACCGCCCGATCGGCATCGGTGTGCAGGGTCTCGCCGACGCGTTCATTCT 6845 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009 || || ||| ||| |||||||| || ||| || | | | || ||| || Sbjct 6846 CATGGGCCACGCGTTCGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTTCGAGAC 6905 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 | || | ||| || |||||||| | || || || || |||||| |||| | Sbjct 6906 GCTGTACTTCGGTGCGATGGAGGCGTCCATGGAGCTCGCCAAGGAGCACGGCCCGTATGC 6965 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 || || | |||| ||||| |||| || || || ||||||||||||||| | || Sbjct 6966 CAGCTATGAGGGCTCCCCGGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCAC 7025 Query 124130 ACCGACAAATT---TGTGGGACTGGA--GCGTTTTAAAACAACGCATATCGACGCACGGT 124184 ||||| | ||||||||| ||| | | || || | | | |||| Sbjct 7026 GCCGACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGCCAGCGTCAAGCA--GTACGGC 7083 Query 124185 TTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGA 124244 |||| ||||||||| || | ||| |||||||||||| | || || || ||| | || Sbjct 7084 GTGCGCAACTCGCTGCTGCTCGCGCCCATGCCGACGGCGTCGACCGCGCAGATTCTTGGC 7143 Query 124245 AACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGC 124304 |||||||| || ||||||||||||| | ||| ||||| || || ||| | |||||| Sbjct 7144 AACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGC 7203 Query 124305 GATTTT 124310 || ||| Sbjct 7204 GAGTTT 7209 >seq683 Length=21216 Score = 111 bits (122), Expect = 1e-19 Identities = 907/1442 (63%), Gaps = 49/1442 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || || || || ||| | | ||||||||| | ||| | ||| | | Sbjct 20327 AAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCAC 20268 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || |||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 20267 GACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 20208 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || |||| ||| |||||| | || ||| |||| || || || |||| Sbjct 20207 ACGCCGACGCTGTTTAACGCGGGCACGCCGCGTCCGCAGCTGTCGTCTTGCTTCCTGCTT 20148 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || ||||| || || || | ||||| | || Sbjct 20147 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTGCGCATGCATC 20088 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 || || | | ||||||||| || |||| ||||||| || | | | | | || || Sbjct 20087 TCGAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCACC--AACTCGT 20030 Query 123198 AT--CAGAAGCACCGACGGAATCGCCTC-CGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 || | | |||| |||| ||| | ||| || | | ||||| || || | || Sbjct 20029 ATATCCGCGGCACGAACGGC-TCGTCGAACGGCCTTGTGCCGATGCTCCGCGTGTTTAAC 19971 Query 123255 AACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| |||| |||||||| |||||| || || ||| || | ||||| || Sbjct 19970 GACACGGCGCGCTACGTGGACCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCGCGATGTAC 19911 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAA-ACGCAACATGGGGGC 123370 || ||||||||||||| ||| | | ||| || | | | || | | | || || | Sbjct 19910 CTCGAACCGTGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGTAAC 19851 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 | | | ||||| ||| |||| ||||| | ||| | || ||| | || ||| Sbjct 19850 G-AGCTCCATCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAA 19792 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGA 123489 || || | | | |||||| |||| ||| | || ||| || | || || || | Sbjct 19791 GCGAGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTGCCCCAATGAGGCACCGGGTCTCTA 19732 Query 123490 G-CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA 123548 |||||| || | |||| || | | ||||| || |||||| || ||| Sbjct 19731 CACGACGTGG--GGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCGC 19674 Query 123549 CAG-GTTAGTCAGGTTCCG-GCACGTGATTT---GTTCAAATTTATTATCGAAACACAAG 123603 | | || | | |||| |||| | | |||| || |||| |||| Sbjct 19673 GCGCGCAAGAC--GATCCGCGCACAGCAGCTCTGGTTCGCG---ATCCTCGAGTCACAGA 19619 Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 |||| || || ||||| |||||||| ||||| ||| | |||||| | || | || ||| Sbjct 19618 TCGAGACGGGCACGCCATACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGC 19559 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||| | || || || | || || ||||||| ||| | |||| |||| || | Sbjct 19558 AGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGCGAGGTGCTCGAGTACA-CGTCG 19500 Query 123724 CC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTT-GC-GTGAATCGTTGCGT-CGAA 123779 || || | || |||||||| || | || || || || || | ||| | ||| Sbjct 19499 CCCGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGAC 19440 Query 123780 AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG---AAT 123836 || | ||| | ||| | | |||| | ||| || || || || | | || Sbjct 19439 GACAAAACGTTTGACTTCAAGAAGCTCTACGACATCACCAAG---GTCGTGACGCGCAAC 19383 Query 123837 TTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGGAAGCGCGTTTGTCTAAT 123893 |||||||| | ||||| | || | || || | |||| | ||| || Sbjct 19382 TTGAACAAGGTCATCGACATCAACTACTACCCAATCCCAGAGGCCGAGCGCAGC---AAC 19326 Query 123894 TTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTG 123953 || ||| | ||| |||| | || | || || | |||||||||||| | | || Sbjct 19325 ATGCGCCACCGCCCGATCGGCATTGGTGTGCAGGGTCTCGCCGACGCGTTTATTCTCATG 19266 Query 123954 CGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATT 124013 || |||| ||| |||||||| || || || | | | || ||| || | Sbjct 19265 GGCCATCCGTTCGAGAGCGACGAGGCCCGCGAACTCAACAAGAACATCTTCGAGACGCTG 19206 Query 124014 TATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGT 124073 || | ||| || |||||||| | ||||| || || |||||| |||| | || Sbjct 19205 TACTTCGGTGCGATGGAGGCGTCCATGGAACTCGCCAAGGAGCACGGCCCGTATGCCAGC 19146 Query 124074 TACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCG 124133 || | |||| ||||| |||| ||| || || || |||||||||||| | || ||| Sbjct 19145 TATGAGGGCTCCCCGGTGAGCAAAGGCATCTTCCAATACGACATGTGGGGCGTCACGCCG 19086 Query 124134 ACAAATT---TGTGGGACTGGA--GCGTTTTAAAACAACGCATATCGACGCACGGTTTGC 124188 || | ||||||||| ||| | | || || | | | | ||| ||| Sbjct 19085 ACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGCCAGCGTCAAGCA--GTATGGTGTGC 19028 Query 124189 GTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACA 124248 | ||||||||| || | ||| ||||| |||||| | ||||| || ||| | || |||| Sbjct 19027 GCAACTCGCTGCTGCTCGCGCCTATGCCAACGGCATCGACTGCGCAGATTCTTGGCAACA 18968 Query 124249 ACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATT 124308 |||| || | ||||||||||| | ||| ||||| || || ||| | |||||||| | Sbjct 18967 ACGAGTCGATTGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGCGAGT 18908 Query 124309 TT 124310 || Sbjct 18907 TT 18906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451905584258920