Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq456 260 2e-64 seq683 235 9e-57 seq26 143 4e-29 seq18 120 5e-22 >seq456 Length=26154 Score = 260 bits (288), Expect = 2e-64 Identities = 429/607 (71%), Gaps = 19/607 (3%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTA 203892 || |||||||||||||||||| || |||| |||| |||| ||| | || ||||| Sbjct 7572 CGCCTTGTCCACCGTGAACTGGATCGCGT---CGGCCTTCGGCCGGCTGCGGAGGTAGTA 7516 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||||||||| |||||||||| |||| |||| | |||||| || | || ||||| | Sbjct 7515 CATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCATCGACGTGAGCTTGCTGAT 7456 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | || ||||| ||||| | |||||| |||||||| ||| |||| | |||||| || | Sbjct 7455 CGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGT 7397 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | || ||||| | | | || ||||||| ||||||||||| |||||| || || Sbjct 7396 CGGCCGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCT 7337 Query 204072 TG-GTGTGTTGAGGCACATC-TTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128 || | || | || ||| | ||||| ||| | |||||||| ||| || | || Sbjct 7336 TGACCGCGTCGGGG---ATCGCGCGCACGTTCTGCACCGAGCCGTGGTCATGCAGGA-TC 7281 Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | | | | ||| | ||| ||||| | | ||| |||||| || |||| | Sbjct 7280 TGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTG 7221 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 || | |||| ||| || |||| ||||| | ||| || ||| |||| | ||||| || Sbjct 7220 TTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGC 7161 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 |||| || |||||||||||| | |||||| ||||| ||||| |||||||| || || Sbjct 7160 TCGATCGACTCGTTGTTGCCAAGAATCTGCGCGGTCGACGCCGTCGGCATGGGCGCGAGC 7101 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---G 204364 ||||| ||||||||||| ||||| | | ||| ||| ||| || | | |||||| | Sbjct 7100 AGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTGAGCGCCGCCCAGTCCCAG 7041 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | || | || | ||||||||||||||| |||| |||||||| | || || ||| Sbjct 7040 AGGCCCGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACCGGG 6981 Query 204425 CTGCCCT 204431 ||||| Sbjct 6980 GAGCCCT 6974 Score = 125 bits (138), Expect = 1e-23 Identities = 444/678 (65%), Gaps = 28/678 (4%) Strand=Plus/Minus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| ||||||||||| || ||||||||||||| |||| ||||| | || |||| Sbjct 6558 CTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTC 6499 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTT-CAC 205044 |||||||| ||| || || | ||| | | |||| | || ||||| | | Sbjct 6498 GATCTGAGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGC 6440 Query 205045 GTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACA-CGT 205103 | | ||| | |||||| | |||||||||| | || || || || ||| Sbjct 6439 GGCCCTCCTT-----CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGT 6385 Query 205104 CCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGT---CTTTCA 205160 | ||| || | | || ||| || |||| | || || ||| | | | Sbjct 6384 GTAAAGCCCCGGGGCCTCGTTCGGG---CAGAAGAGGCTCCA-CTCGCCGTTGGCCTCGA 6329 Query 205161 CCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTC 205220 | | || ||| || || || |||||||| | |||| ||||||||||| || | | Sbjct 6328 CGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGAGCACGATGGA 6269 Query 205221 CGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGC 205279 |||| || ||||||| || | ||| || || || | ||||| |||||||||||| Sbjct 6268 GCTCGTTACCGTGGTTCTTCTTGAGGTCGAGG-AACTCGAAGATGTCCGCGTGCCACGGC 6210 Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTC 205339 || | ||| || | | ||| | |||| || ||||||||||| ||| | | Sbjct 6209 TCGAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCC 6150 Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTG 205399 | ||||||| || || ||||||||||| || ||||| | | |||||||||| | | Sbjct 6149 GTGTCGTTGAACACGCGGAGCATCGGCACGAGTCCGTTCGACGAGCCGTTCGTGCCGCGG 6090 Query 205400 ATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTG 205459 ||| |||| || | | |||| | | | | || || ||||| | |||||| Sbjct 6089 ATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTG 6030 Query 205460 GCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAG 205518 | ||| |||||||| |||| || ||| ||||||||| |||| || |||||| || Sbjct 6029 GAGATGCAGGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 5971 Query 205519 TGTCACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTG 205576 | || ||| |||| || | |||| ||| | ||||| |||| || ||||| Sbjct 5970 GGCCAGCAGGAAGCAAGACGAGAGCTGCGGGCGCGG--CGTGCCAGCGTTAAACAGCGTC 5913 Query 205577 GGGCTGGCGTGGCTGAAG 205594 || | ||||| ||||| Sbjct 5912 GGCGTCGCGTGCGTGAAG 5895 >seq683 Length=21216 Score = 235 bits (260), Expect = 9e-57 Identities = 426/609 (70%), Gaps = 23/609 (4%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGC---AGGCCTGCTTCTCAGATAGTA 203892 || |||||||||||||||||| || |||| |||| || | ||| | || ||||| Sbjct 18543 CGCCTTGTCCACCGTGAACTGGATCGCGT---CGGCCTTCGGTCGGCTGCGGAGGTAGTA 18599 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA- 203951 |||||||||||| |||||||||| ||| |||| | |||||| || | || ||||| | Sbjct 18600 CATGCCGGTCTTGAGGCCCTTCTTCCATGCGTAGAAGTGCATCGACGTGAGCTTGCTGAT 18659 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010 |||| || ||||| ||||| | |||||| |||||||| ||| |||| |||| || || Sbjct 18660 CGTT-GGATCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATG-TAGGCACCGCGG 18717 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || |||||||| | | | || ||| ||| ||||||||||| |||||| || || Sbjct 18718 TCGGCGGCCATGTCCAGCACGGCCTTTTGCTTGATCTCCCACACGGTCTTGTACTTCTCC 18777 Query 204071 CTG-GTGTGTTGAGG--CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAG 204126 || | || | || |||| | ||||| ||| | |||||||| ||| | | Sbjct 18778 TTGACCGCGTCGGGGATCACA----CGCACGTTCTGAACCGAGCCGTGGTCATGTAGGA- 18832 Query 204127 TCT-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGG 204185 ||| | | | ||| | ||| || |||| | ||| |||||| || |||| Sbjct 18833 TCTGGTTGCGCACCTCGGGCGTCCAGATTCCCAGCTCGATGAGCTCCTTCATGAGGTACT 18892 Query 204186 GGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATG 204245 ||| | |||| ||| || |||| ||||| | ||| || ||| |||| | ||||| | Sbjct 18893 TGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACG 18952 Query 204246 GTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305 | || | || |||||||||||| | |||||| || || ||||| ||||| || || | Sbjct 18953 GCTCAATCGACTCGTTGTTGCCAAGAATCTGCGCAGTCGATGCCGTTGGCATAGGCGCGA 19012 Query 204306 GGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-- 204363 | ||||| |||||||||||||| || | | ||| ||| ||| || | | |||||| Sbjct 19013 GCAGCAGCGAGTTGCGCACACCATACTGCTTGACGCTGGCCTTGAGCGCCGCCCAGTCCC 19072 Query 204364 -GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTG 204422 | | || | || | ||||||||||||||| | || |||||||||| || || | Sbjct 19073 AGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTATTGGAAGATGCCTTTGCTCACCG 19132 Query 204423 GGCTGCCCT 204431 || ||||| Sbjct 19133 GGGAGCCCT 19141 Score = 107 bits (118), Expect = 3e-18 Identities = 284/431 (66%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || || || |||||||| | |||| |||||||||||||| | | || Sbjct 19791 CTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGGGCGCGATGGAGCTC 19850 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 || || ||||||| || | ||| || || || | || || ||||||||||| || | Sbjct 19851 GTTACCGTGGTTCTTCTTGAGGTCGAG-GAACTCGAAGATATCCGCGTGCCACGGTTCGA 19909 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 ||| || | | ||| | |||| |||||||||||||| ||| | | | Sbjct 19910 GGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCACGTAGCGCGCCGTGT 19969 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| || || || ||||||||||| || ||||| | | |||||||||| | ||| Sbjct 19970 CGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATAT 20029 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||| || | | |||| | | | | || || ||||| | ||||| | || Sbjct 20030 ACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTCGAGA 20089 Query 205464 TCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 | ||||||| | ||| ||| ||||||||| |||| || |||||| || | | Sbjct 20090 TGCATGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCAA 20149 Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583 ||| |||| || | ||||| | | |||||||||| || ||||| || | | Sbjct 20150 GCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTAAACAGCGTCGGCGTCG 20209 Query 205584 CGTGGCTGAAG 205594 |||| ||||| Sbjct 20210 CGTGCGTGAAG 20220 >seq26 Length=77529 Score = 143 bits (158), Expect = 4e-29 Identities = 321/472 (68%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || ||||| || || ||||||| |||||| || | Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||||| |||||| |||||||| || || | ||| ||| | | | Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCG-AGCAGAAGGAGCCC 8076 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || ||||| ||||| |||||||| || || || | | ||| |||| | || Sbjct 8077 GAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCAAACGCCGC---- 8132 Query 160094 GTGTCATGGGTC-CACCTTTTG---GCCCATTCAGCCTTCTT-TGCGATGCACGGCATGC 160148 | | | | ||| |||| ||| ||||| | |||||||| ||| | ||| || ||| Sbjct 8133 GCGGCGCGAGTCGCACCACTTGAGAGCCCAGTGGGCCTTCTTCTGC-ACGCAAGGGATGG 8191 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 ||| | ||| | | || || |||| || |||||||| || |||| | Sbjct 8192 TCTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGA 8251 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || ||| |||| || | ||| | || |||||||| ||||| ||| |||||| | Sbjct 8252 GCAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAAC 8311 Query 160269 TCGCCTCCAGATACTGCACCTC-CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 ||||||| | ||||||||| ||| |||| | | || || | || || | Sbjct 8312 GCGCCTCCGGGACCTGCACCTCGCTG-CTGAAGTTCATGGCGAGGTTCTCGTTGACAATG 8370 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 ||||| ||| |||||||| || | |||||| |||||| | | ||||| Sbjct 8371 CCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGT 8422 >seq18 Length=85926 Score = 120 bits (132), Expect = 5e-22 Identities = 244/355 (69%), Gaps = 12/355 (3%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || ||||| || || ||||||| || || || | Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCG 160033 | ||||||| ||||||| |||||| ||||||||||| || | ||| ||| | || Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCG-AGCAGAAGGATCCA 69153 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| ||||||||||| || || | | ||| |||| | || Sbjct 69152 GAGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGC---- 69097 Query 160094 GTGTCATGGGTC-CACCTTTT---GGCCCATTCAGCCTTCTT-TGCGATGCACGGCATGC 160148 | | | | ||| |||| || ||||| | |||||||| ||| | || || ||| Sbjct 69096 GCGACGAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGC-ACACAAGGAATGG 69038 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 ||| | ||| | | || || |||| || |||||||| || |||| | Sbjct 69037 TCTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGA 68978 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAA 160263 || |||||||| || | ||| | || |||||||| ||||| ||| |||||| Sbjct 68977 GCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 68923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794983476295120