Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq26 248 9e-61 seq18 235 5e-57 seq1872 95.1 1e-14 seq14351 93.3 4e-14 seq1843 82.4 8e-11 >seq26 Length=77529 Score = 248 bits (274), Expect = 9e-61 Identities = 427/612 (70%), Gaps = 10/612 (2%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||| || |||||||| || | |||||| || | || ||||| ||||| || Sbjct 7958 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 8017 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||||||||||||||| || || |||||||| || || | | ||| ||||| Sbjct 8018 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGGAGCCCG 8077 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| |||||||||||||||||| || || | |||||| | |||| || | Sbjct 8078 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCAAACGCCGCG-CGG 8136 Query 133067 TGCTGG-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || | || ||| || ||||| | |||||| | | ||||| || || || || Sbjct 8137 CGCGAGTCGCACCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTCTCA 8196 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGA--GGAACGC-ACGTAGGTGTCGATGAGG 133182 || ||| | | || | |||| |||| || | | ||| ||||| ||||| Sbjct 8197 ATCGCGCGGAGAA---GGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGC 8253 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 |||||||| || ||||| | |||||| |||||||| || |||||||| ||||| ||| Sbjct 8254 AGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGC 8313 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| |||||||| || ||| | | | || || |||||||| |||||| Sbjct 8314 GCCTCCGGGACCTGCACCTCGCTGCTGAAGTTCATGGCGAGGTTCTCGTTGACAATGCCG 8373 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 || |||||||| || || || ||||||||||||||||| | |||||||||||| | | | Sbjct 8374 TCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGAGG 8433 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 | |||||| | | | | || || || || | ||| ||| | ||||| || ||| Sbjct 8434 TTGTTCCAGTC-CTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTCGC 8492 Query 133422 CTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 |||||| || |||||||| ||||| || | || || || || | || ||||| Sbjct 8493 CTCGGCCTTCTTGTACATCTGCCACACTTCGTTCTCCTGAATCGGGAAGAGGACGAACCG 8552 Query 133482 GCGGGGGTTTTC 133493 | |||||||| Sbjct 8553 GTTCGGGTTTTC 8564 >seq18 Length=85926 Score = 235 bits (260), Expect = 5e-57 Identities = 436/633 (69%), Gaps = 9/633 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||| || |||||||| || | |||||| || | || |||||||| || || Sbjct 69271 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGA 69212 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||| |||||||| || || || ||||||||||| || | | ||| || | Sbjct 69211 AGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAG 69152 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| |||||||||||||| || || || | |||||| | |||| || Sbjct 69151 AGAAGAAGATACCCTCGACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGCGAC 69092 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | || ||| ||| ||||| | |||||| | | || || || || || || | Sbjct 69091 GAGAGTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTCAA 69032 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGA--GGAACGC-ACGTAGGTGTCGATGAGGG 133183 | ||| | | || | |||| |||| || | | ||| ||||| ||||| Sbjct 69031 TCGCGCGGAGAA---GGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCA 68975 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| |||| |||||||| | |||||| |||||||| || |||||||| ||||| || | Sbjct 68974 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTG 68915 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 |||| |||||||| || ||| | | | || ||||||||||| ||||||| Sbjct 68914 CCTCAGGGACCTGCACCTCGCTGCTGAAGTTCATGGCGAGGTTTTCGTTGACAATGCCGT 68855 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 | |||||||| ||||| || ||||| ||||||||||||| |||||| ||||| | | | Sbjct 68854 CACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATAGCGCTCATTGTCCGTGAGGT 68795 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 | |||||| | | | | || | ||| || | ||||||| | ||||| || |||| Sbjct 68794 TGTTCCAGTC-CTTGAGGTCGTGCACCAGATCAATCTCCTCGGCCGTCCAGAAGCTCGCC 68736 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 ||||| || |||||||| ||||| || | || || ||||| | || || ||| Sbjct 68735 TCGGCCTTCTTGTACATCTGCCACACCTCGTTCTCCTGAATCGGAAAGAGAACGAAGCGG 68676 Query 133483 CGGGGGTTTTCGCGCAACAGCGGCTCC-GCTTG 133514 ||||||||| | | | ||||||| ||||| Sbjct 68675 TTGGGGTTTTCCTGAAGGAACGGCTCCGGCTTG 68643 >seq1872 Length=9383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||||||| |||| ||||| || || | || ||||| ||||| || |||| ||||| | Sbjct 9379 TCCCGCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGC 9320 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| |||||||||| ||||||||||| || | || | Sbjct 9319 TGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTG 9260 Query 38470 GC 38471 || Sbjct 9259 GC 9258 >seq14351 Length=379 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || | || || ||||| || || | ||| ||||| Sbjct 358 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAG 299 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| ||| |||||||||||||| ||||| ||||||| || Sbjct 298 CAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACGCTCCAC 239 Query 38448 TTGGTGCTGCG 38458 ||||||| || Sbjct 238 CTGGTGCTCCG 228 >seq1843 Length=9525 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | || || ||||| || || | ||| ||||| ||||| || || | ||| Sbjct 3158 GGAATTCCTCCGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGC 3099 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||| |||||||||||||| ||||| |||||||||| | ||||| || Sbjct 3098 ACGCTCTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCG 3046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500064781431680