Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq683 233 2e-56 seq1000 143 3e-29 seq467 120 4e-22 seq18 114 2e-20 seq26 113 5e-20 seq133 84.2 3e-11 >seq683 Length=21216 Score = 233 bits (258), Expect = 2e-56 Identities = 767/1178 (65%), Gaps = 28/1178 (2%) Strand=Plus/Plus Query 110058 GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTG 110117 ||| | ||| || | ||||| ||| | || ||||||||| | || || |||||||| Sbjct 19236 GCGGGCCTCGTCGCTCTCGAACGGATGGCCCATGAGAATAAACGCGTCGGCGAGACCCTG 19295 Query 110118 AACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG-TCGAGCAGTTTCTACGGGGT 110176 ||||| | || || ||||| || |||||| ||| ||| || | | |||| Sbjct 19296 CACACCAATGCCGATCGGGCGGTGGCGCATGTTGCTGCGCTCG-GCCTCTGGGATTGGGT 19354 Query 110177 AAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGA 110236 | ||||| |||||||||| || | || |||||| ||| ||||| || | || Sbjct 19355 AGTAGTTGATGTCGATGACCTTGTTCAAGTTGCGCGTCACGACCTTGGTGATGTCGTAGA 19414 Query 110237 GTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACG 110296 | || | | | || |||||||| || | || ||| | |||| || || || |||| Sbjct 19415 GCTTCTTGAAGTCAAACGTTTTG---TCGTCGTTCACAAACTTGGACAGCGCGATGGACG 19471 Query 110297 CAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAA 110354 | || |||||||| | |||||| | || ||||| || | | || || | Sbjct 19472 CGAGGTTGCACACGGCGACCTCGTCG--GGCGACGTGTACTCGAGCACCTCGCAGCAAAG 19529 Query 110355 GTTG---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATC 110411 |||| || | | || || | ||||| ||| ||||| ||| |||||| | || Sbjct 19530 GTTGCTCGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTC 19586 Query 110412 CTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATAC 110471 ||| || ||||||||||| || || || || ||||||||| ||| || || ||| | Sbjct 19587 CTTGTACAGCATGTATGGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGAG 19646 Query 110472 ATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | ||| ||| || |||| ||| | || |||| |||||||| | ||||| Sbjct 19647 CTGCTGTGCGCGGATCGTCTTGCGC--GCGCGGCCCTCCTTCTCGTACTGGTGGTACAGC 19704 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAG--AAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 |||| || || | || ||| || | |||||| |||| | ||| ||||||| Sbjct 19705 GCCTCGAACTCGTCACCC--CACGTCGTGTAGAGACCCGGTGCCTCATTGGGGCAGAAGA 19762 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 || ||| | || |||| || | ||||||||| || || || |||||||| || Sbjct 19763 GGCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGT 19822 Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707 |||| || |||||| ||| || | ||| ||||| || || | || | Sbjct 19823 AGAACAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACT 19882 Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA---CGAC 110764 | | |||||||| |||||| |||||||| || | |||| || ||||| || | | Sbjct 19883 CGAAGATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGC 19942 Query 110765 CCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824 | |||||| || ||||| || ||| | || || || | |||||| || | || || | Sbjct 19943 CACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGT 20002 Query 110825 CGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCA 110884 || || || || || | || || || |||||||||||| ||| | || Sbjct 20003 TCGACGAGCCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCA 20062 Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATAC 110944 ||| || || || |||||||| || ||| |||| | || || | || || | Sbjct 20063 CACCGATGCCGCCGGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGC 20122 Query 110945 CATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCG 111004 | || ||||| || |||| |||||| || |||||||| |||| ||| ||||| |||| Sbjct 20123 CCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCG 20182 Query 111005 TTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGT 111064 | ||||| || || || || || ||||| || |||| | | ||| ||||| | | || Sbjct 20183 TGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGT 20242 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | || ||||| |||| | | || | ||| || || | || || || | | || Sbjct 20243 ACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCA 20302 Query 111125 TATATTG-AGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGG 111183 | | || |||| | || | ||| ||| | || ||| | || || |||||| || Sbjct 20303 TCTGCTGCGGGCGCTCCG-CGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGC 20361 Query 111184 GTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 ||||||| |||||||| | | || ||||| || || Sbjct 20362 GTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTC 20399 >seq1000 Length=16061 Score = 143 bits (158), Expect = 3e-29 Identities = 319/474 (67%), Gaps = 31/474 (7%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||||| || || | || | || || || || |||||||| Sbjct 13699 AATCTGGCGATCGAAACGACCTGGACGAAGAATCGCCTTGTCGAGGATGTCAACACGGTT 13758 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| | || | || || | ||| |||| | || ||||||||||||||| ||| Sbjct 13759 GGTACCAGCCAGCACAACCACGCC---CTCACTCGAGTTGAAACCGTCCATTTCCACGAG 13815 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC---CGAACG 11669 || ||||| | || | || |||||||||||| ||||| | || | Sbjct 13816 CAGTTGGTTCAGTGTGTTCTCTCGCTCATCGTTG---------CCACCCGAAAACGTTCC 13866 Query 11670 CTTCTTAC---------CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT 11720 ||| ||| ||||||| || || ||||||||||| || || || || ||| Sbjct 13867 CTTGCTACGTGCGCGCGCGACAGCATCGATTTCATCGATGAAGACAATGCATGGAGAGTT 13926 Query 11721 GGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 ||||| || | ||| | ||||| |||||| | || || || ||||||||||| Sbjct 13927 TGCACGAGCTTCACGGAACAAATCACGCACACGCGATGGGCCGACGCCAACGAACATCTC 13986 Query 11781 AACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTC 11839 || || | | | || | |||||| ||| || ||| | | |||||||| |||| Sbjct 13987 AATAAAATCGGAACCCGAGATACTGAA-GAACGGCACACTGGCTTCACCAGCCGTGGCCT 14045 Query 11840 GAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCT 11899 || ||||| |||||||| |||||||| | ||| | || || ||||| || |||| Sbjct 14046 TCGCAAGGAGCGTCTTACCAGTACCAGGAGGTCCAACAAGCAGTGCGCCCTTCGGAATCT 14105 Query 11900 TGGCACCACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 ||||||| || | | ||| || || ||| ||||||||| |||| |||| Sbjct 14106 TGGCACCCAGATCAGTGAATCGCTTCTGGTTTC-GGAGGAAGTCAACAAACTCC 14158 >seq467 Length=25957 Score = 120 bits (132), Expect = 4e-22 Identities = 284/427 (67%), Gaps = 29/427 (7%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||||| || || | || | || ||||| || |||||||| Sbjct 2355 AATCTGGCGATCGAAACGACCTGGACGAAGAATTGCCTTGTCGAGAATGTCTACACGGTT 2296 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| | || | || || | ||| |||| | || |||||| |||||||| ||| Sbjct 2295 GGTACCAGCCAGCACAACCACGCC---CTCACTAGAGTTGAAACCATCCATTTCCACGAG 2239 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC---CGAACG 11669 || ||||| | || | || || ||||||||| ||||| | || | Sbjct 2238 CAGTTGGTTCAGTGTGTTCTCTCGTTCATCGTTG---------CCACCCGAAAACGTTCC 2188 Query 11670 CTTCTTAC---------CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT 11720 ||| ||| ||||||| || || ||||||||||| || || || || ||| Sbjct 2187 CTTACTACGTGCGCGCGCGACAGCATCGATTTCATCGATGAAGACAATGCATGGAGAGTT 2128 Query 11721 GGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 ||||| || | ||| | ||||| |||||| | || || || || |||||||| Sbjct 2127 TGCACGAGCTTCACGGAACAAATCACGCACACGCGATGGACCGACGCCAACAAACATCTC 2068 Query 11781 AACGAAGTTTGCGGCAGAACA-CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTC 11839 | || | | | | ||| ||||| ||| || ||| | | ||||| || |||| Sbjct 2067 GATAAAATCGGAGCCCGAAATGCTGAA-GAACGGCACACTGGCTTCACCGGCTGTGGCCT 2009 Query 11840 GAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCT 11899 || ||||| |||||||| |||||||| | ||| | || || || || ||||||| Sbjct 2008 TCGCAAGGAGTGTCTTACCAGTACCAGGAGGTCCAACAAGCAGTGCACCCTTCGGGATCT 1949 Query 11900 TGGCACC 11906 ||||||| Sbjct 1948 TGGCACC 1942 >seq18 Length=85926 Score = 114 bits (126), Expect = 2e-20 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || |||||||| ||||| ||||| || ||||||||||| || Sbjct 69248 TGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGAAGCTGAGGCCAGGCATGAGACCA 69189 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||||||||| | || || |||||| |||||||| ||||| || Sbjct 69188 CGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAGAGAAGAAGATACCCTCGACGGCC 69129 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTCGAACCACTTGAGA 119681 || || |||| | ||||| ||||| | | ||||| |||| ||||||| ||| Sbjct 69128 GCAAAGGCGACAATGCGCTCCGCAAACGCCGCGCGACGAGA---GTCGCACCACTTCAGA 69072 Query 119682 GCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 69071 GCCCAGTGGGCCTT 69058 >seq26 Length=77529 Score = 113 bits (124), Expect = 5e-20 Identities = 190/275 (69%), Gaps = 9/275 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || ||||| || || |||||||| || Sbjct 7981 TGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGAGGCCA 8040 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || || || |||||||||||||| || Sbjct 8041 CGCTTCTTGAGCCAGAAGATCGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGGCC 8100 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTCGAACCACTTGAGA 119681 ||||| |||| | ||||| ||||| | | || || |||| ||||||||||| Sbjct 8101 GCGAAGGCGACAATGCGCTCCGCAAACGCCGCGCGGCGCGA---GTCGCACCACTTGAGA 8157 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||||| |||||| || | ||| |||| || | || || || ||| || ||| Sbjct 8158 GCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTCTCAATCGCGCGGAGAAGGTGGTTC 8217 Query 119742 TTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 || || | ||||| || || | |||||||| Sbjct 8218 TTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAG 8252 >seq133 Length=44745 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/184 (71%), Gaps = 14/184 (8%) Strand=Plus/Plus Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| |||||||| || ||||| || ||||||||||| |||||||| | ||| | || || Sbjct 23826 CTCGCCAGCGATTGCACGAGCAAGCAGAGTCTTACCAGTACCAGGCGGACCGGTCAGCAG 23885 Query 11883 GGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT----AGCGCTCAGGCTTCTTGAGGA 11938 |||| || | ||| | || | || || |||||||||| | ||| |||| Sbjct 23886 TACGCCTTTCGGCAGGTTGCCTCC----CAAACGTGTGAAGCGCTCAGGGTCCTTCAGGA 23941 Query 11939 AGTCCACAATCTCCTCAAGTTCCTCCTTGG---CGGAGTCGATACCCTCAACATCGGTGA 11995 | | ||| |||||||| ||||| || |||| | ||| || |||| |||||| ||| Sbjct 23942 ACTGCACTATCTCCTCGAGTTCTTCTTTGGCTTCTGAGGCG---CCCTTGACATCGCTGA 23998 Query 11996 AACG 11999 | || Sbjct 23999 AGCG 24002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588848803270600