Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq683 246 4e-60 seq456 203 4e-47 seq18 158 1e-33 seq26 114 2e-20 >seq683 Length=21216 Score = 246 bits (272), Expect = 4e-60 Identities = 567/843 (67%), Gaps = 17/843 (2%) Strand=Plus/Plus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 19543 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAT 19602 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTG-GTAC 106662 ||||| |||||||| ||||||||| ||| || || ||| | || |||| | | Sbjct 19603 GGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGA-----GCTGCTGTGCGC 19657 Query 106663 A-ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 || | ||| || || |||||| |||||||| ||| || || || ||||| | Sbjct 19658 GGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 19717 Query 106719 CACCCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 ||||| || ||| | ||||||| ||||||| | || ||||| || ||| | || Sbjct 19718 CACCCCACGTCGT-GTAGAGACCCGGTGCCTCATTGGGGCAGAAGAGGCTCCACTCGCCG 19776 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 |||| || ||||||||||| || || || ||||||| || | || ||||| | Sbjct 19777 TTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGG 19836 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGC 106896 ||| |||| ||| ||||| || | | || |||||||| | ||||||||| Sbjct 19837 GCGCGATGGAGCTCGTTACCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATATCCGC 19895 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTAC 106953 |||||| || || || || | |||| || |||||||| ||| || | || | || Sbjct 19896 GTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCAC 19955 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 |||||||| ||| ||||||| ||||| ||||| || | || || | || || || Sbjct 19956 GTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGACGAGCCGTT 20015 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || || ||| || || |||| | | | || | | || || || || || Sbjct 20016 CGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCC 20075 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 |||||||| ||||| || |||| | | || || | ||||| || | ||| ||||| Sbjct 20076 GGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTC 20135 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| |||| | ||||||||| |||| |||||| | || || || || || || Sbjct 20136 GTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTAAA 20195 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 20196 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 20255 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGT 107313 | |||||||| | | ||||||||||| || || || | || ||| | || || Sbjct 20256 GGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCG 20315 Query 107314 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 ||| || ||||| ||| || | ||||| |||||| || || |||| ||||| Sbjct 20316 CTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTTGAAGCCAAA 20375 Query 107374 GTA 107376 ||| Sbjct 20376 GTA 20378 >seq456 Length=26154 Score = 203 bits (224), Expect = 4e-47 Identities = 562/846 (66%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 6572 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 6513 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 6512 GGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 6453 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || |||||| |||||||| ||| || || || ||||| || | Sbjct 6452 GTCTTGCGC--GCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 6395 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | | || || || |||| || || ||||| || ||| | || Sbjct 6394 CCCACGTCGT-GTAAAGCCCCGGGGCCTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTG 6336 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 |||| || ||||||||||| || || || ||||||| || | || ||||| | | || Sbjct 6335 GCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGAGCA 6276 Query 106840 CC---GAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCG 106895 | |||| |||| ||| ||||| || | | || |||||||| | ||| |||| Sbjct 6275 CGATGGAGC----TCGTTACCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCCG 6221 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTA 106952 ||||||| ||||| || || | |||| || ||||| || ||| | | || | | Sbjct 6220 CGTGCCACGGCTCGAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCA 6161 Query 106953 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 107012 | |||||||| ||| |||| || ||||| ||||| || | | || | || || | Sbjct 6160 CGTAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGTCCGTTCGACGAGCCGT 6101 Query 107013 TTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 | || || || || ||||| || |||| | | | || | | || || || || Sbjct 6100 TCGTGCCGCGGATGTACGAG--TTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCC 6043 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 || |||||||| ||||| || |||| | | || || | ||||| || | ||| || Sbjct 6042 GCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGA 5983 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| |||| | ||||||||| || | |||||| | || || ||||| || Sbjct 5982 GTCGTCCTTCATGGCCAGCAGGAAGCAAGACGAGAGCTGCGGGCGCGGCGTGCCAGCGTT 5923 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 107250 || || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 5922 AAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAG 5863 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | | || ||||| | | ||||||||||| || || || | || ||| | || || Sbjct 5862 CGCGGCGTCGATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGG 5803 Query 107311 TGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACC 107370 ||| || |||| ||| || | || || |||||| || || |||| || Sbjct 5802 GCGCTCCGCGACCTTGCCGCCGACGCGCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCC 5743 Query 107371 AAAGTA 107376 |||||| Sbjct 5742 AAAGTA 5737 >seq18 Length=85926 Score = 158 bits (174), Expect = 1e-33 Identities = 344/504 (68%), Gaps = 16/504 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| ||||||||||||||||| | || || | ||||| Sbjct 69548 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTCCCCTGGAGCGAGATCATGTCCATC 69489 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||| ||||| ||| | || | || | ||| |||| | ||| ||||| Sbjct 69488 CAGTCGAATGGGTTCGAGACCTTGTAGATCTTGGACACGCCAAGCGCGTGGAGAAGACGG 69429 Query 117106 TCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| |||| | ||| ||||||| | |||| |||||||| ||||| || | Sbjct 69428 TCCG-CACAGAACTCGATGTACTGGCACATGAGGGACGAGTTCATGCCGATCAGCTCCAC 69370 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | |||| | |||| | ||||| ||| || || || | ||| |||| Sbjct 69369 CGGGAGCGAGTCCTGAACGAACTCCTTCTCGATCGAGACGGCATCGCGGATGATCTCGTG 69310 Query 117225 GATA---GTTTC-GGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTC-CACGGCAAA 117278 ||| | || ||||| || | |||| | | | | ||| |||| | || Sbjct 69309 GATGCGCGACTCTGGTAG-----CTTGTTGGCAAGCTTCGAGTACAGCAGGCACG-CGAA 69256 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || |||||| |||||||| || || || |||||||| ||||||| ||||| ||||| Sbjct 69255 GTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGAAGCTGAGGCCAGGCAT 69196 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 |||||| |||||||| | |||| | || | |||||| || || ||||||||||||||||| Sbjct 69195 GAGACCACGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAGAGAAGAAGATACCCTC 69136 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCATT 117457 || |||||| || | || |||||| || || | ||| ||| | ||| |||| | Sbjct 69135 GACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGCGAC-GAGAGTCGCACCACT 69077 Query 117458 TCATTGCCCATTTCGCCTTCTTCT 117481 ||| ||||| | |||||||||| Sbjct 69076 TCAGAGCCCAGTGGGCCTTCTTCT 69053 >seq26 Length=77529 Score = 114 bits (126), Expect = 2e-20 Identities = 332/502 (66%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 7681 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTTCCCTGGAGCGAGATCATGTCCATC 7740 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 | || || || ||| | || | || | ||| |||| | ||| ||||| Sbjct 7741 CAATCGAACGGGTTCGAGACCTTGTAGATCTTGGACACGCCAAGCGCGTGGAGAAGACGG 7800 Query 117106 TCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| |||| | ||| ||||||| | |||| |||||||| ||||| || | | Sbjct 7801 TCCG-CACAGAACTCGATGTACTGGCACATGAGGGACGAGTTCATGCCGATAAGCTCAAC 7859 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | |||| || |||| | ||||||||| || || || | ||| |||| Sbjct 7860 CGGGAGCGAGTCCTGGACGAACTCCTTCTCAATCGAGACGGCGTCACGGATGATCTCGTG 7919 Query 117225 GATA---GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACT 117280 ||| | |||| | | | || | || | | ||| |||| | || | Sbjct 7920 GATGCGCGACTCGGGAA---GCTTGTTGGCGAGCTTCGAGTACAGCAGGCACG-CGAAGT 7975 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | |||||| |||||||| || || || || || || ||||||| ||||| ||||||| Sbjct 7976 CGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGA 8035 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 | || |||||||| | ||| | || | |||||| || || ||||||||||| ||||| | Sbjct 8036 GGCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 8095 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCATTTC 117459 | ||| || || | || |||||| || || | ||| | | | ||| |||| || Sbjct 8096 CGGCCGCGAAGGCGACAATGCGCTCCGCAAACGCCGCGCGGC-GCGAGTCGCACCACTTG 8154 Query 117460 ATTGCCCATTTCGCCTTCTTCT 117481 | ||||| | |||||||||| Sbjct 8155 AGAGCCCAGTGGGCCTTCTTCT 8176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589853386271480