Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5268 223 3e-53 seq757 219 3e-52 seq1466 86.0 5e-12 >seq5268 Length=2107 Score = 223 bits (246), Expect = 3e-53 Identities = 444/646 (69%), Gaps = 20/646 (3%) Strand=Plus/Plus Query 29751 GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29809 ||| |||| ||| || ||||| | | |||| | | | | |||||| ||| || |||| Sbjct 52 GTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGAACCTTGAGGGGTT 110 Query 29810 CCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTA 29869 | || || ||||| || | ||||||||| || | |||||| | || || |||| | Sbjct 111 CGACATGGTCCAGATAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGGA 170 Query 29870 GCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTA 29929 | || || || || || |||| ||| | ||| | |||||| |||||||| ||||| | Sbjct 171 GTCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGTTGAAGGGCA 230 Query 29930 CCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCA 29989 | |||||||||||||| | || | ||| || | || ||||| ||||| ||||| | Sbjct 231 CGCCGAGCCCCATGTCGGCTGAGCGCTGATACATTTGGCACGATAGCTCACCGTCCGCGA 290 Query 29990 CGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAG-TCTTTGGGG 30048 |||||||||| || | ||||||| || || || ||||| | ||| || ||| Sbjct 291 CGTAAAACTGGCAGAACATGTGGCAGGGGGGCAGTGCCAT-CTCCTTAAGATCGGCCGGG 349 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC-----CTGATGAGGTCCA 30103 ||||| || ||| ||| ||||| | ||| | || || || || |||| || Sbjct 350 TTCCATGCTGACATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGCTTATGA--ATCA 407 Query 30104 CGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTAC 30162 | | ||| ||||| || || ||| || | |||||| || ||| ||||||| Sbjct 408 C----CTCTGCAAGCTGGTCGACGCCCTGGCCGGTGTAGTCGGCGTGCATCGTCGTGTAC 463 Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30222 | ||| ||||| || | ||||||||| |||||||||||||| |||||||| |||| | Sbjct 464 TTTGCGCCGAAGTGGCGCCACTGGAAACCGTACACCGGTCCGAGGTCTCCGGCTTCACGA 523 Query 30223 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30282 || ||| || | | || | | | || | || || ||| | |||||||| || | Sbjct 524 TGACCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGATG 583 Query 30283 CCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30340 ||||| || | || | || |||| ||| ||| || |||| |||||||| |||||||| Sbjct 584 CCCTTGTCCTGCAG-GGTC-TTGGCGTTGGTGTCACCACTGATGAACCACAACAGCTCCT 641 Query 30341 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 | | ||| | ||| || || | |||||||| || || ||||| Sbjct 642 CTGCAACGCCGCGCCAGAACACGCGTTTGGTCGTTAGAAGTGGAAA 687 >seq757 Length=19743 Score = 219 bits (242), Expect = 3e-52 Identities = 436/641 (68%), Gaps = 10/641 (2%) Strand=Plus/Minus Query 29751 GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29809 ||| |||| ||| || ||||| | | |||| | | | | ||||| ||| || || | Sbjct 19494 GTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGGACCTTGAGGGGCT 19436 Query 29810 CCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTA 29869 | || ||||||||||| | ||||||||| || | |||||| | || || |||| | Sbjct 19435 CGACATGATCCAGGTAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGCA 19376 Query 29870 GCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTA 29929 |||| || || || || |||| ||| | ||| | |||||| |||||||| ||||| | Sbjct 19375 GCCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGCGCGTAGCTCGCGATGTTGAAGGGCA 19316 Query 29930 CCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCA 29989 | ||||| |||||||| | || | ||| || | ||| || || ||||| ||||| | Sbjct 19315 CACCGAGACCCATGTCGGCTGAGCGCTGATACATCTGGCAAGACAGCTCACCGTCCGCGA 19256 Query 29990 CGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGT 30049 |||||||||| || | |||| || || || || ||||| | || |||| Sbjct 19255 CGTAAAACTGGCAGAACATGTGACAGGGGGGCAGTGCCATCTCCTTGAGATCGGCCGGGT 19196 Query 30050 TCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGG 30106 |||| || ||| ||| ||||| | ||| | || || || | | |||| ||| Sbjct 19195 TCCATGCTGACATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGTTTGAGAATCACCT 19136 Query 30107 CGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30165 || || ||||| || || ||| |||| |||||| || ||| |||||||| | Sbjct 19135 CG----GCAAGCTGGTCGACGCCCTGACCCGTGTAGTCGGCGTGCATCGTCGTGTACTTT 19080 Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225 || ||||| || | ||||||||| |||||||||||||| |||||||| |||| | || Sbjct 19079 GCGCCGAAGTGGCGCCACTGGAAGCCGTACACCGGTCCGAGGTCTCCGGCTTCACGATGA 19020 Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285 ||| || | | || | | | || | || || ||| | |||||||| || | ||| Sbjct 19019 CCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGATGCCC 18960 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30345 || || ||| |||| ||| ||| || |||| |||||||| ||| ||||| | Sbjct 18959 TTGTCCTGCAGCGTCTTGGCGTTGGTGTCACCACTGATGAACCACAACAGTTCCTCTGCA 18900 Query 30346 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 || | ||| || || | |||||||| || || ||||| Sbjct 18899 ACACCGCGCCAGAACACGCGTTTGGTCGTAAGAAGTGGAAA 18859 >seq1466 Length=11765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 52047 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52104 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| || Sbjct 1095 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACCA 1152 Query 52105 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52163 ||| | ||||||||||||||| ||| || | | || || |||||| ||||||||||| Sbjct 1153 TCCGCAACCAGGAGGACATGCCGTTCAACGACCAGGGCGT-GTGCCCGGACCTCATCATG 1211 Query 52164 AACCCCCACGCCTTTCC 52180 ||||| |||| ||| || Sbjct 1212 AACCCGCACGGCTTCCC 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408531560073521