Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq26 199 7e-46 seq456 178 2e-39 seq18 163 5e-35 seq683 156 8e-33 >seq26 Length=77529 Score = 199 bits (220), Expect = 7e-46 Identities = 390/571 (68%), Gaps = 14/571 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| |||||||||||||||| | | || |||||| ||||||||||| ||||| Sbjct 8516 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTT---CTGGACTGCCGAAGAGATCGATCTT 8460 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| | | | |||| || || | | |||||| | || ||||| || Sbjct 8459 GTGCACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCAC 8400 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || |||||||| ||| ||| || || || |||||||| || | || ||| Sbjct 8399 GTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCAACGAGAACCTCGCCATGAACTTC 8340 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||| || |||||| | |||||| || |||||||| |||||||| |||||||| Sbjct 8339 AGCAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCTTCTACGGCTTCCAGATCGCCATCGAG 8280 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCC 25773 || | ||||||||||||||| | ||| || || |||||||| | ||| | Sbjct 8279 AACATCCACTCTGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGACCAGACG 8223 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | | || | | || || ||| ||| || || | ||| |||||| | Sbjct 8222 GAGAAGAACCACCTTCTCCGCGCGATTGAGACCATCCCTTGCGTGCAGAAGAAGGCCCAC 8163 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| | |||||| | || | |||| |||||| ||||| | || ||||| Sbjct 8162 TGGGCTCTCAAGTGGTGCGACTCGCGCCGCGCGGCGTTTGCGGAGCGCATTGTCGCCTTC 8103 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 || || || ||||||||||| ||| || || || ||| | ||||||||||||||| | Sbjct 8102 GCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCT-CGATCTTCTGGCTCAAGAA 8044 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| || ||| || |||||||||||| | || ||||| || Sbjct 8043 GCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCCT 7984 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||| | || || || |||||||| ||| || Sbjct 7983 CCACTGCGACTTCGCGTGCCTGCTGTACTCG 7953 >seq456 Length=26154 Score = 178 bits (196), Expect = 2e-39 Identities = 732/1134 (65%), Gaps = 48/1134 (4%) Strand=Plus/Minus Query 221508 CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG 221567 ||||||| || ||||| || ||||| ||||| || | ||| | | |||| ||| || Sbjct 6835 CGTCGGCGAGACCCTGCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCT-GCGCTCG 6777 Query 221568 -CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACT 221626 | || || | ||| || |||||| |||||| | ||||| ||||| | || | ||| Sbjct 6776 GCCTCCGGGATGGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACC 6717 Query 221627 TTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGT 221686 || | ||| ||||||| | || | ||| ||| || | || Sbjct 6716 TTGGTGATGTCGTAGAGCTTCT------TAAAGTCAAAC--------GTCTTGTCGTCGT 6671 Query 221687 TCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG 221746 || ||||| | || || | | || ||||| |||||||| |||||||| || | Sbjct 6670 TC-ACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACGGCGACCTCGTC--TGGCG 6614 Query 221747 --GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 || |||| | | ||| || |||||||| | ||| || || |||| | | Sbjct 6613 ACGTGTACTCGAGCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCT 6554 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCT 221864 | || |||||||| ||| | ||||||||| ||||| | || ||| ||||| | || Sbjct 6553 GGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCT 6494 Query 221865 GAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCAC-- 221921 ||| | | || ||| | |||||| | ||| |||| | |||| ||| || | Sbjct 6493 GAGACTCGAGGATCGCGAACCAGAGCTG-CTGCGCGCGGATCGTC---TTGCGCGCGCGG 6438 Query 221922 -CCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCC 221980 |||| ||| || ||| | || ||| || |||| || || ||| | || Sbjct 6437 CCCTC---CTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGTAA 6381 Query 221981 AGGCCTGGACACCTGG--CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCT 222038 || || || ||| | |||| || | || ||||| | |||| | | ||| | || Sbjct 6380 AGCCCCGGGG-CCTCGTTCGGG-CAGAAGAGGCTCCACTCGCCGTTGGCCTCGACGCGCT 6323 Query 222039 GCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCA 222098 ||||||||| ||||||||||||| || | || ||||| | | || || ||| Sbjct 6322 TCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGAGCACGATGGAGCTCGT 6263 Query 222099 CGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGAT 222158 |||| ||| ||| | || || | ||||| || ||||| |||||||||||||| || | Sbjct 6262 TACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGT 6203 Query 222159 AGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGT 222218 | | || | | ||| |||||| ||| ||||| ||||| | | || ||| Sbjct 6202 ACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGT 6143 Query 222219 TGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA-CCGTTGGTGCCCTTAATGTAC 222277 |||| | ||| || |||| || |||||||| || ||| ||||| ||||| |||||| Sbjct 6142 TGAACACGCGGAGCATCGGCACGAGTCCGTTCGA-CGAGCCGTTCGTGCCGCGGATGTAC 6084 Query 222278 GCACCGCCGGCCCTCAGGT--TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGA 222335 | | ||| | | || | | || ||| ||||| || ||||| || |||| Sbjct 6083 GAGTTGGTGGCGCGGATGTTGTGCACGCTCACA--CCGATGCCGCCGGCCCACTTGGAGA 6026 Query 222336 TCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCA 222395 | |||||| |||||| ||||| ||||||||| || ||||| ||||| | | || Sbjct 6025 TGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCCA 5966 Query 222396 GCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGG 222455 |||| || |||||||| | ||| | | | | |||||||||||||| || | | Sbjct 5965 GCAGGAAGCAAGACGAGAGCTGCGGGCGCGGCGTGCCAGCGTTAAACAGCGTCGGCGTCG 5906 Query 222456 CGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGT 222515 |||| || ||| ||| ||||| ||||||||||| | | | |||||| || Sbjct 5905 CGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGT 5846 Query 222516 CCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCT 222575 | ||| || | ||| | | ||| | ||| || | |||| | || ||| Sbjct 5845 GCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGC--GA-CCT 5789 Query 222576 TGGAGCTGGAG---AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGT 222626 || || | | ||||||||||| || || || |||||||| |||||||||| Sbjct 5788 TGCCGCCGACGCGCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGT 5735 >seq18 Length=85926 Score = 163 bits (180), Expect = 5e-35 Identities = 550/852 (65%), Gaps = 29/852 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| |||||||||||||||| | | || |||||| ||||| |||||||||||| Sbjct 68713 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTT---CTGGACGGCCGAGGAGATTGATCTG 68769 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| | | | |||| || || | | | |||| |||| ||||| | Sbjct 68770 GTGCACGACCTCAAGGACTGGAACAACCTCACGGACAATGAGCGCTATTTCATCAAGCAT 68829 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || || ||||| ||| ||| || || || ||||| || || | || ||| Sbjct 68830 GTGCTCGCGTTTTTTGCCGCCAGTGACGGCATTGTCAACGAAAACCTCGCCATGAACTTC 68889 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||| || |||||| | ||||| || |||||||| |||||||| |||||||| Sbjct 68890 AGCAGCGAGGTGCAGGTCCCTGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATCGAG 68949 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCC 25773 || | ||||| |||||||| | ||| || || |||||||| | ||| | Sbjct 68950 AACATCCACTCGGAGGTGTA---CTCGCTGCTCATTGACACGTACATCAAGGACCAGACG 69006 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | | || | | || || ||| ||| || | | ||| |||||| | Sbjct 69007 GAGAAGAACCACCTTCTCCGCGCGATTGAGACCATTCCTTGTGTGCAGAAGAAGGCCCAC 69066 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| |||||||| | || | |||| |||||| ||||| | || |||||| Sbjct 69067 TGGGCTCTGAAGTGGTGCGACTCTCGTCGCGCGGCGTTTGCGGAGCGCATTGTCGCCTTT 69126 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 || || || ||||| ||||| ||| || || || ||| | ||||| ||||||||| | Sbjct 69127 GCGGCCGTCGAGGGTATCTTCTTCTCTGGATCCTTCTGC-TCGATCTTTTGGCTCAAGAA 69185 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||| || || ||| || || || |||||| | || ||||| || Sbjct 69186 GCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAATGAACTCATCTCGCGTGATGAGGGCCT 69245 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| | || || || |||||||| ||| | | ||||| | |||| | | ||| Sbjct 69246 CCACTGCGACTTCGCGTGCCTGCTGTACTC--GAAGCTTGC-CAACAAGC---TACCAGA 69299 Query 26073 GAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | | | || || |||||| || || || ||||||||||||||| Sbjct 69300 GTCGCGCATCCACGAGATCATCCGCGATGCCGTCTCGATCGAGAAGGAGTTCGTTCAGGA 69359 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG-T 26188 | ||||||||| |||||| |||| ||||| ||| | Sbjct 69360 CTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGTCCCTCATGTGCCAGTACATCGAGTT 69419 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT--AA 26246 ||| || |||| ||| || | ||| || | ||| |||||| | | || || Sbjct 69420 CTGT-GCGGACCGTCTTCTCCACGCGCTTGGCGTGTCCAAGATCTACA--AGGTCTCGAA 69476 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||| ||||||| ||||| | || ||| | | ||||||||||||||||| || ||| | Sbjct 69477 CCCATTCGACTGGATGGACATGATCTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGCG 69536 Query 26307 GGTCGGCGACTA 26318 || ||||| || Sbjct 69537 TGTGGGCGAGTA 69548 >seq683 Length=21216 Score = 156 bits (172), Expect = 8e-33 Identities = 611/946 (65%), Gaps = 25/946 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| |||||||| |||||||| || |||| | | ||| || ||| Sbjct 19471 GCGAGGTTGCACACGGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAAAGG 19530 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||| | ||| || || |||| | || || |||||||| ||| | ||||||| Sbjct 19531 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTG 19590 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | || ||| ||||| | ||| | | | || ||| | |||||| | Sbjct 19591 TACAGCATGTATGGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGAGCTG- 19649 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAG 221949 ||| |||| | |||| ||| || | |||| ||| || ||| | || || Sbjct 19650 CTGTGCGCGGATCGTC---TTGCGCGCGCGGCCCTC---CTTCTCGTACTGGTGGTACAG 19703 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | || |||| ||||| ||| | || || || || | ||| || | || Sbjct 19704 CGCCTCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCATTGGGGCAGAAGAG 19763 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||||| | |||| | | ||| | || ||||||||| ||||||||||||| || | Sbjct 19764 GCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTA 19823 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || ||||| | || || || ||| |||| ||| ||| | || || | ||||| Sbjct 19824 GAACAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTC 19883 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || || || ||||||||||| || || || | || | | ||| ||||||| ||| Sbjct 19884 GAAGATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCC 19943 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 |||||| ||||| | | || |||| || | ||| || |||| || || ||||| Sbjct 19944 ACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTT 20003 Query 222250 GGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCAGA 222306 || ||| ||||| ||||| || |||| | ||| | | || | | || | Sbjct 20004 CGA-CGAGCCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCA 20062 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGAT-CATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 || ||||| || ||||| |||||||| ||| ||||| ||| || ||||| || Sbjct 20063 CA--CCGATGCCGCCGGCCCACTTCGAGATGCAT-GCGCACTGCTTCAGCGTGTCGTAGA 20119 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 ||||||| || ||||| ||||| | | ||||| || |||||||||| ||| | | Sbjct 20120 TGCCCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCG 20179 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGAT 222485 | | |||||||||||||| || | ||||| || ||| ||| ||||| | Sbjct 20180 GCGTGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACT 20239 Query 222486 CGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGT 222545 |||||||||| | | | | |||| || | ||| || | ||| | | Sbjct 20240 CGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAA 20299 Query 222546 ACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAG---AGCAGGTACGATTTTT 222602 ||| | ||| || | |||| | || ||||| | | | ||||| ||||| || | Sbjct 20300 TCATCTGCTGCGGGCGCTCCGC--GA-CCTTGCCACCGACGCGCAGCAGATACGACTTCT 20356 Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTG 222648 | || |||||||| |||||||||| | |||||| || | | |||| Sbjct 20357 CGAGCGTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTG 20402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928644204354880