Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq683 221 1e-52 seq456 176 5e-39 seq18 158 1e-33 seq26 114 2e-20 >seq683 Length=21216 Score = 221 bits (244), Expect = 1e-52 Identities = 562/845 (67%), Gaps = 19/845 (2%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || || |||||| ||||| | || ||| ||||| || | Sbjct 20378 TACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTGCTGCGCGTCGGTGGCAAGGTCGCG 20319 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || ||| ||| | ||| | | || ||||| ||||||||||| | | |||||||| Sbjct 20318 GAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCACGACATTGAC 20259 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 | | | ||||| ||||| | ||||| ||| | | |||| ||||| || || || Sbjct 20258 GCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACG 20199 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || || || || || || || | |||||| |||| ||||||||| | |||| ||| Sbjct 20198 CTGTTTAACGCGGGCACGCCGCGTCCGCAGCTGTCGTCTTGCTTCCTGCTTGCCATGAAG 20139 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| ||| | || ||||| | || || | | |||| || ||||| |||||| Sbjct 20138 GACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTGCGCATGCATCTCGAAGTGG 20079 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || || || || || | | || | | | |||| || || ||| || || Sbjct 20078 GCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCACCAACTCGTATATCCGCGGC 20019 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || || || | || || | || ||||| ||||| ||||||| ||| |||||| Sbjct 20018 ACGAACGGCTCGTCGAACGGCCTTGTGCCGATGCTCCGCGTGTTTAACGACACGGCGCGC 19959 Query 75566 TATGTAAATCAAGCGGGGCG----TCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 || || | | || | |||| || ||||| || ||||| | ||| | ||||| || Sbjct 19958 TACGTGGA-CCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCGCGATGTACCTCGAACCGTG 19900 Query 75622 GCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 ||| || |||||| | |||||||| || | | || ||||| ||| |||| || Sbjct 19899 GCACGCGGATATCTTCGAGTTCCTCGACCTCAAGA-AGAACCACGGTAACGAGCTCCATC 19841 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | ||||| || | || ||||||| || || || ||||||||||| || |||| Sbjct 19840 GCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAAGCGAGTCGAGG 19781 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG-CGGTG 75799 || | ||| || ||||| || | ||||||| ||||||| | ||| || | Sbjct 19780 CCAACGGCGAGTGGAGCCTCTTCTGCCCCAATGAGGCACCGGGTCTCTAC-ACGACGTGG 19722 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 ||||| ||||| || || || ||| |||| || ||||||| | || ||| || Sbjct 19721 GGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCGCGCGCGCAAGACG 19662 Query 75857 A-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 | | | | |||| || | ||| || || ||| | ||||||| ||||| || | Sbjct 19661 ATCCGCGCACAGCAGC-----TCTGGTTCGCGATCCTCGAGTCACAGATCGAGACGGGCA 19607 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 | ||||| ||||| |||||||| | || ||| ||| ||||| |||| | || | Sbjct 19606 CGCCATACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCA 19547 Query 75975 CAATC 75979 | ||| Sbjct 19546 CGATC 19542 >seq456 Length=26154 Score = 176 bits (194), Expect = 5e-39 Identities = 559/850 (66%), Gaps = 29/850 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || || |||||| || || | || ||| |||| || | Sbjct 5737 TACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTGCTGCGCGTCGGCGGCAAGGTCGCG 5796 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || ||| ||| | ||| | | || ||||| ||||||||||| | | ||||| || Sbjct 5797 GAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCACGACATCGAC 5856 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 | | | ||||| ||||| | ||||| ||| | | |||| ||||| || || || Sbjct 5857 GCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACG 5916 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || || || ||||| || || | |||||| | || ||||||||| | |||| ||| Sbjct 5917 CTGTTTAACGCTGGCACGCCGCGCCCGCAGCTCTCGTCTTGCTTCCTGCTGGCCATGAAG 5976 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| ||| | || ||||| | || || | | |||| || ||||| |||||| Sbjct 5977 GACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGG 6036 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 || || || || || || | | || | | | |||| || ||||| || || | Sbjct 6037 GCCGGCGGCATCGGTGTGAGCGTGCACAACATCCGCGCCACCAA--CTCGTACATCCGCG 6094 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | || | | || ||||| ||||| || |||| ||| |||| Sbjct 6095 GCACGAACGGCTCGTCGAACGGACTCGTGCCGATGCTCCGCGTGTTCAACGACACGGCGC 6154 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || ||||| | ||| | || || | Sbjct 6155 GCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTACCTCGAGCCGT 6214 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| || || ||| | |||||||| || | | || ||||| ||| |||| ||| Sbjct 6215 GGCACGCGGACATCTTCGAGTTCCTCGACCTCAAGA-AGAACCACGGTAACGA----GCT 6269 Query 75680 C---GGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | ||| | | ||||| || | || ||||||| || || || ||||||||||| || Sbjct 6270 CCATCGTGCTCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAAGCGCGT 6329 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG- 75794 |||| || | ||| || ||||| || || |||| || || || | | ||| Sbjct 6330 CGAGGCCAACGGCGAGTGGAGCCTCTTCTGCCCGAACGAGGCCCCGGGGCTTTAC-ACGA 6388 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CA 75851 || ||| || ||||| || || || ||| |||| || ||||||| | || || Sbjct 6389 CGTGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCGCGCGCGCA 6448 Query 75852 ATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 | ||| | | | |||| || | ||| || || ||| | || |||| ||||| Sbjct 6449 AGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGAGTCTCAGATCGAGAC 6503 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || || || || ||||| |||||||| | || ||| ||| ||||| |||| | Sbjct 6504 GGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCT 6563 Query 75970 GGGAACAATC 75979 || || ||| Sbjct 6564 CGGCACGATC 6573 >seq18 Length=85926 Score = 158 bits (174), Expect = 1e-33 Identities = 344/504 (68%), Gaps = 16/504 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC-TTCGCCGAG 65079 |||||||||| | ||||| |||| |||| ||| | ||| ||| | || || ||| Sbjct 69053 AGAAGAAGGCCCACTGGGCTCTGAAGTGGTGCGACTCTC-GTCGCGCGGCGTTTGCGGAG 69111 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 ||| || | || |||||| || ||||||||||||||||| || || |||||| | || Sbjct 69112 CGCATTGTCGCCTTTGCGGCCGTCGAGGGTATCTTCTTCTCTGGATCCTTCTGCTCGATC 69171 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||| | |||||||| ||||||||||| ||||| ||||||| |||||||| || || Sbjct 69172 TTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAATGAACTCATCTCG 69231 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAG-ACTTTGCGTAATA 65257 || |||||||| |||||| || || | |||| ||| | | | | |||| | | Sbjct 69232 CGTGATGAGGGCCTCCACTGCGACTTCG-CGTGCCTGCTGTACTCGAAGCTTGCCAACAA 69290 Query 65258 GACCCACTACC-GAAAC---TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | ||||| || | ||||||| ||| | || || || ||| ||||| Sbjct 69291 G-----CTACCAGAGTCGCGCATCCACGAGATCATCCGCGATGCCGTCTCGATCGAGAAG 69345 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | |||| | |||| | ||||| | || ||||| |||||||| |||| | Sbjct 69346 GAGTTCGTTCAGGACTCGCTCCCGGTGGAGCTGATCGGCATGAACTCGTCCCTCATGTGC 69405 Query 65374 GAGTACATTGAG-TATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTG 65432 ||||||| ||| | |||| |||| ||||| ||| | |||| ||| | || | Sbjct 69406 CAGTACATCGAGTTCTGTG-CGGACCGTCTTCTCCACGCGCTTGGCGTGTCCAAGATCTA 69464 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 || | ||| ||||| |||| ||||| | || || | |||||||||||||| Sbjct 69465 CAAGGTCTCGAACCCATTCGACTGGATGGACATGATCTCGCTCCAGGGGAAGACCAACTT 69524 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| || || || || Sbjct 69525 CTTCGAGAAGCGTGTGGGCGAGTA 69548 >seq26 Length=77529 Score = 114 bits (126), Expect = 2e-20 Identities = 332/502 (66%), Gaps = 12/502 (2%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC-TTCGCCGAG 65079 |||||||||| | ||||| | || |||| ||| | | | ||| | || || ||| Sbjct 8176 AGAAGAAGGCCCACTGGGCTCTCAAGTGGTGCGACTCGC-GCCGCGCGGCGTTTGCGGAG 8118 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 ||| || | || || ||| || ||||| ||||||||||| || || |||||| | || Sbjct 8117 CGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCGATC 8058 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || || Sbjct 8057 TTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCG 7998 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTTTGCGTAATAG 65258 || |||||||| |||||| || || | |||| ||| | | || | || | Sbjct 7997 CGTGATGAGGGCCTCCACTGCGACTTCG-CGTGCCTGCTGTACTCGAAGCTCGCCAACAA 7939 Query 65259 ACCCACTACCGAAAC---TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | | |||| | ||||||| ||| | || || || ||||||||| | Sbjct 7938 GC---TTCCCGAGTCGCGCATCCACGAGATCATCCGTGACGCCGTCTCGATTGAGAAGGA 7882 Query 65316 GTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGA 65375 |||| || |||| | ||||| | | || ||||| |||||||| |||| | | Sbjct 7881 GTTCGTCCAGGACTCGCTCCCGGTTGAGCTTATCGGCATGAACTCGTCCCTCATGTGCCA 7822 Query 65376 GTACATTGAG-TATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTTGGA 65434 |||||| ||| | |||| |||| ||||| ||| | |||| ||| | || | | Sbjct 7821 GTACATCGAGTTCTGTG-CGGACCGTCTTCTCCACGCGCTTGGCGTGTCCAAGATCTACA 7763 Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCT 65494 | | ||| || || || | ||||| | || || | || ||||||||||||| Sbjct 7762 AGGTCTCGAACCCGTTCGATTGGATGGACATGATCTCGCTCCAGGGAAAGACCAACTTCT 7703 Query 65495 TTGAGAAGCGAGTTGGGGACTA 65516 | |||||||| || || || || Sbjct 7702 TCGAGAAGCGTGTGGGCGAGTA 7681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596440763337760