Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5262 91.5 4e-13 seq5206 91.5 4e-13 seq408 84.2 6e-11 >seq5262 Length=2108 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | ||||| |||||||||||||| || |||||| | || || || || || Sbjct 138 CTTGATAGCCGAAGCGAGGGCACCAAGCGAGTCGCGATCGAGGTAGTTCGTCGGCTCATC 197 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 | || ||| | |||||| | || |||||| || || || || || ||||| |||||||| Sbjct 198 CATGACAAGGATGTGCGGGTTCAGCCACATGGCAGCGGCAAGGACGACCTTGACCTTCTG 257 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | |||| ||| | Sbjct 258 ACCACCCGACAGACCACGCATGCGCGAGTGCGTACCGAACTCGGCACCAAGACCGAAGTT 317 Query 354183 GTCGAGATGTTTCTGTAC 354200 ||| || || ||||| || Sbjct 318 GTCAAGGTGCTTCTGGAC 335 >seq5206 Length=2145 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | |||||| ||||||||||| || || |||||| | || || || || || Sbjct 2008 CTTGATAGCCGAGGCGAGGGCACCAAGCGAATCGCGATCGAGGTAGTTCGTCGGCTCATC 1949 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 | || ||| | |||||| | || |||||| || || || || || ||||| |||||||| Sbjct 1948 CATGACAAGGATGTGCGGGTTCAGCCACATGGCAGCGGCAAGGACGACCTTGACCTTCTG 1889 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | |||| ||| | Sbjct 1888 ACCACCCGACAGACCACGCATGCGCGAGTGCGTACCGAACTCGGCACCAAGACCGAAGTT 1829 Query 354183 GTCGAGATGTTTCTGTAC 354200 ||| || || ||||| || Sbjct 1828 GTCAAGGTGCTTCTGGAC 1811 >seq408 Length=27789 Score = 84.2 bits (92), Expect = 6e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGA-TGCGTCATATAG 251462 ||||| | ||||| | | |||||| || |||| ||| || || || | || | || Sbjct 1112 GCGATGATGCCACAGATGTCACACACGTGAACGCGGTAGGCGTCCGAGTTCGCGAACAAG 1171 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 | | || | | |||| | || || || || || | |||||| |||||||| || || Sbjct 1172 CGGTCCATAAG-GAAGTTGGCTGAGCCATGCGAGATGAGACAATCGCGCTCCATCTCTCC 1230 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| || ||||| | ||| || ||||| || || | | || Sbjct 1231 CATACGCAGACCACCTTCTCGAGCACGACCTTCCATGGGCTGGCGTGTCAACATCGTCAC 1290 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||||| ||||| || ||| || | ||||||||||| | ||||||||||| Sbjct 1291 AGGACCGCGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAAGCGCTGGTAGAA 1350 Query 251643 TGCGGGACCGATGAAGAT 251660 | || ||||||||||| Sbjct 1351 CGTTGGGCCGATGAAGAT 1368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471491796156349