Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq456 215 5e-51 seq683 185 8e-42 seq7289 84.2 2e-11 >seq456 Length=26154 Score = 215 bits (238), Expect = 5e-51 Identities = 999/1554 (64%), Gaps = 66/1554 (4%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || || || || |||| | || | ||| || ||||| | || || || ||| Sbjct 7238 TCCTTCATGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTAC 7179 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| | ||||| ||||| | ||| |||||||| || |||||||| || || | ||| Sbjct 7178 ATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCAAGAATCTGCGCGGTCGACGCC 7119 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 ||||||||| ||| | || || || || || | |||| |||||| | ||||| Sbjct 7118 GTCGGCATGGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTG 7059 Query 138664 AGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720 |||| || ||||||||| | | | || | | |||||| |||||||| || Sbjct 7058 AGCGCCGCCCAGTCCCAGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAG 6999 Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACA--CCAAACTCTTGCGCCA 138778 || ||| || | || ||| || || | | |||| || ||| | || | Sbjct 6998 ATGCCCTTGCTCACCGGGGAGCCCTCATAGC--TGGCATACGGGCCGTGCTCCTTGGCGA 6941 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| || |||||| | |||||| |||| | || ||| || | || |||||| Sbjct 6940 GCTCCATGGACGCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCT 6881 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 ||||||||| |||||||| ||| || | | ||||||||||||| || || | Sbjct 6880 CGCGGGCCTCGTCGCTCTCGAACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGACCCT 6821 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATT--TGACGCTTTTGCGGCTTC---GAT 138953 |||| || | |||| ||||| |||||||| || || |||| |||| || ||| Sbjct 6820 GCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCTG-CGCT----CGGCCTCCGGGAT 6766 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013 || || ||||| | ||||||| ||||| | || ||| || ||||| || | | Sbjct 6765 GGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACCTTGGTGATGT- 6707 Query 139014 CTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 | | | | | | ||| || | || ||||||||| || ||||| ||| Sbjct 6706 CGTAGAGCTTCTTAAAGTCAAACGTC------TTGTCGTCGT-----TC-ACAAACTTG- 6660 Query 139073 TGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGA 139129 |||| || || || | ||||||||| || || ||||| || | || |||| |||| Sbjct 6659 -GACAGCGCGATGGACGCGAGGTTGCACACGGCGACCTCGTCTGGCGACG-TGTACTCGA 6602 Query 139130 CAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTC 139189 | ||| || | || || | |||||| || | || || || || || | Sbjct 6601 GCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGC 6542 Query 139190 GGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAA 139249 |||| || | || ||||| ||||| ||||| ||||| || || | || | ||| | | Sbjct 6541 GGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGAGACTCGAGGA 6482 Query 139250 TGAATTTGAACAAGTCC--CTA-GCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGC 139302 | |||| || | || || | || ||| ||| || | | || | Sbjct 6481 TCGC---GAACCAGAGCTGCTGCGCGCGGATCGTCTTG-CGCGCGC---GGCCCTCCTTC 6429 Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||| | ||| || | ||||| |||| || | ||| || || | | Sbjct 6428 TCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGTAAAGCCCCGGGGC- 6370 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || || | ||| ||| ||||||| |||| ||||||| ||||||| ||||| Sbjct 6369 CTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATC 6310 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTAC 139480 ||| ||||||| ||| | | || ||| || || | | || || || || | | Sbjct 6309 CGGGATCCACATGGCGTAGAACAGATCACGAGCACGATGGAGCT--CGTTACCGTGGTTC 6252 Query 139481 GT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 | || | || ||||| || || | ||| |||||||| || || || || || || | Sbjct 6251 TTCTTGAGGTCGAGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTACATCGCGAAC 6192 Query 139540 GCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 | ||| || || ||||| || || || |||| || | | | ||||| ||||| Sbjct 6191 GAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGG 6132 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCT 139656 | ||||||| | || ||| ||| | ||||| |||| |||||| |||| || Sbjct 6131 AGCATCGGCACGAGTCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCG 6072 Query 139657 CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCG 139716 |||| || || || | | ||||| |||||| | | ||||| || | |||| | | Sbjct 6071 CGGATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT-G 6013 Query 139717 CGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 | | | || ||||| || || || |||||||| ||| | | ||| ||||| || Sbjct 6012 CTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCCAGCAGGAAGCAAGA 5953 Query 139776 CGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACAT 139835 ||| || ||||| | |||||| || |||||| || || ||||||||||||| | Sbjct 5952 CGAGAGCTGCGGGCGCGGCGTGCCAGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAA 5893 Query 139836 TTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATA 139893 || |||||| | |||||||| |||| ||| | || || ||| |||||| Sbjct 5892 GCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTT--GTGGATG 5835 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttt 139953 ||||||| ||| || | | ||| || || || || || ||| ||| ||| Sbjct 5834 CCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGCGACCTTGCCGCCGACGCGC 5775 Query 139954 ttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||| || ||||| || |||||| |||||||||| || | ||||||| Sbjct 5774 AGCAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAATCG 5721 >seq683 Length=21216 Score = 185 bits (204), Expect = 8e-42 Identities = 1006/1577 (64%), Gaps = 66/1577 (4%) Strand=Plus/Plus Query 138462 GTACAGATTC--AACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCA 138519 || ||||||| | || ||| | || || || || || |||| | || | ||| || Sbjct 18853 GTCCAGATTCCCAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTAAACTCG 18912 Query 138520 CCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTT 138579 ||||| | || || || ||| |||||| | ||||| ||||||| ||| |||||||| Sbjct 18913 CCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCAATCGACTCGTTGTTG 18972 Query 138580 CCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAA 138639 || |||||||| || || | || || ||||| ||| | || || || || || | | Sbjct 18973 CCAAGAATCTGCGCAGTCGATGCCGTTGGCATAGGCGCGAGCAGCAGCGAGTTGCGCACA 19032 Query 138640 CCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC---TAGGTTTT 138696 || | |||||| | ||||||||| || ||||||||| | | | || | Sbjct 19033 CCATACTGCTTGACGCTGGCCTTGAGCGCCGCCCAGTCCCAGAGGCCCGACGTCGGCGTG 19092 Query 138697 TTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCG 138756 | |||||| ||||| || || || || || | || ||| || || | | Sbjct 19093 ACGCCCCACATGTCGTATTGGAAGATGCCTTTGCTCACCGGGGAGCCCTCATAGC--TGG 19150 Query 138757 TATACA--CCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAG 138814 |||| || ||| | || | || || |||||| | |||||| |||| | | Sbjct 19151 CATACGGGCCGTGCTCCTTGGCGAGTTCCATGGACGCCTCCATCGCACCGAAGTACAGCG 19210 Query 138815 TTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCA 138874 | ||| || | || ||||| ||||||||| |||||||| |||| || | | Sbjct 19211 TCTCGAAGATGTTCTTGTTGAGTTCGCGGGCCTCGTCGCTCTCGAACGGATGGCCCATGA 19270 Query 138875 TCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATT-- 138932 | ||||||||||| || || ||||| || | |||| ||||| ||||||| || Sbjct 19271 GAATAAACGCGTCGGCGAGACCCTGCACACCAATGCCGATCGGGCGGTGGCGCATGTTGC 19330 Query 138933 TGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATT 138989 || |||| |||| || ||| || || ||||| | ||||||| ||||| || || Sbjct 19331 TG-CGCT----CGGCCTCTGGGATTGGGTAGTAGTTGATGTCGATGACCTTGTTCAAGTT 19385 Query 138990 TCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGT 139048 ||| || ||||| || | | | | | | | | || || | || |||| Sbjct 19386 GCGCGTCACGACCTTGGTGATGT-CGTAGAGCTTCTTGAAGTCAAACGTT------TTGT 19438 Query 139049 CGTCGACGACGTCGACAAATTTGTTGACACAA--ATCGAGGCTATGTTGCACACCGCCAC 139106 ||||| || ||||| ||| |||| || || || | ||||||||| || || Sbjct 19439 CGTCGT-----TC-ACAAACTTG--GACAGCGCGATGGACGCGAGGTTGCACACGGCGAC 19490 Query 139107 TTCGTCGGG-GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTAC 139165 |||||||| | || |||| |||| | ||| || | || || | |||||| | Sbjct 19491 CTCGTCGGGCGACG-TGTACTCGAGCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGC 19549 Query 139166 CTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGC 139225 | | || || || || || ||||| || | || ||||| ||||| || || |||| Sbjct 19550 CGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTATGGCGTGC 19609 Query 139226 CAGTTTCCACTTGTGTCTCTATAAT---GAATTTGAACAA--GTCCCTAGCTTGTATTTG 139280 | || || | |||| ||| | || ||| || | || | | | || || Sbjct 19610 CCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGAGCTGCTGTGCGCGGATCGTCTTGC 19669 Query 139281 ACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGT 139339 ||| || | || |||||||| | ||| || | ||||| |||| |||| Sbjct 19670 GCGCGCGGC-----CCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGT-CACCCC 19723 Query 139340 AGG-CGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCC 139398 | | ||| | ||| | | || | || || | ||| ||| ||||||| ||| Sbjct 19724 ACGTCGTGT-AGAGACCCGGTGCCTCATTGGGGCAGAAGAGGCTCCACTCGCCGTTGGCC 19782 Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTC 139458 | ||| ||| ||||||| |||||||| ||||||| ||| | | || ||| || || Sbjct 19783 TCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGGGCGCGA 19842 Query 139459 TT-ATCTTCCGAACCCATGTTACGT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCC 139516 | | || || || || | | | || | || ||||| || || | || ||||||| Sbjct 19843 TGGAGCT--CGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATATCCGCGTGCC 19900 Query 139517 ATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCC---ACCTTGATCGACGTGTC 139573 | ||||| || || || || | | ||| || || ||||| ||| || || |||| | Sbjct 19901 ACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCACGTAGC 19960 Query 139574 GTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGC 139633 | | | | || || ||||| | ||||||| | || ||| ||| | ||||| |||| Sbjct 19961 GCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGACGAGCCGTTCGTGC 20020 Query 139634 TACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAA 139693 ||||| |||| || || | || || || | | ||||| |||||| | Sbjct 20021 CGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCCGGCCC 20080 Query 139694 ATTTGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCC 139752 | || || || | |||| | || | | || ||||| || || || ||||||| Sbjct 20081 ACTTCGAGATGCATGCGCACT-GCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCC 20139 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 | ||| | | ||| ||||| ||||| || ||||| | |||||| || |||||| Sbjct 20140 TTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTAAACAGC 20199 Query 139813 GTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTC 139872 || || ||||||||||||| | || |||||| | |||||||| |||| ||| Sbjct 20200 GTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCG 20259 Query 139873 ACAATATC--CCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTT 139930 |||| || ||| |||||| ||||||| ||| || | | ||| || || || | Sbjct 20260 TCAATGTCGTGCTT--GTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCT 20317 Query 139931 CGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGT 139990 | || ||| ||| ||| |||||| ||||| || |||||| ||||||||| Sbjct 20318 CCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGT 20377 Query 139991 ACCTATAGTTGAAATCG 140007 | |||| |||||| Sbjct 20378 AGTCGTAGTCAAAATCG 20394 >seq7289 Length=1152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || |||||||| || || | | Sbjct 1009 GATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTC 1068 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || | || || || |||||||| ||||| || || || ||||| ||||| Sbjct 1069 GGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 1128 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 || || ||||||| ||||| || Sbjct 1129 GCAGCGCCTGATCTTCGCCGGCAA 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449800438989560