Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq456 246 3e-60 seq683 242 4e-59 >seq456 Length=26154 Score = 246 bits (272), Expect = 3e-60 Identities = 1185/1845 (64%), Gaps = 63/1845 (3%) Strand=Plus/Minus Query 146585 TGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATTGTGAATCGAA 146643 |||| | || |||||||| || |||||||| | || ||||| || ||| ||||| Sbjct 7528 TGCGGAGGTAGTACATGCCGGTCTTGAGGCC-CTTCTTCCACGCGTAGAAGTGCATCGAC 7470 Query 146644 GTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATG 146703 || | || | ||||||||| || | | | || | ||| ||||| || ||| Sbjct 7469 GTGAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATG 7410 Query 146704 AAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTTCCCAAGCGGT 146762 | ||| ||||||||||||||| || | || | | || || ||| || ||||| |||| Sbjct 7409 TAGGCGCCGCGGTCGGCCGCCATGTCCAGCACGGCCTTCTG-CTTGATCTCCCACACGGT 7351 Query 146763 TTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTG 146822 |||||| | |||| || || || || | | ||| || | ||||| | || Sbjct 7350 CTTGTACTTCTCCTTGACCGCGTCGGGGATCGCGCGCACGTTCTGCACCGAGCCGTGGTC 7291 Query 146823 CGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAAT 146882 | || ||| || | |||||||| | | | || | ||||| || | || Sbjct 7290 ATGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCAT 7231 Query 146883 TAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCT 146942 | |||| || || | ||||||||| || ||||| || | | |||| ||| | Sbjct 7230 GAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGT 7171 Query 146943 AGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCAT 147002 ||||| ||||| | ||||| || ||||| | || || || || | || || ||||| Sbjct 7170 CGTGAACGGCTCGATCGACTCGTTGTTGCCAAGAATCTGCGCGGTCGACGCCGTCGGCAT 7111 Query 147003 GTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTG 147062 | ||| | || || || || |||| |||||| || | || |||| | | Sbjct 7110 GGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTGAGCGCCGC 7051 Query 147063 CCAGTCCCACAT---CGACGAGGGCGTCACGTTCCACATGTCGTACTGGA----GCACTC 147115 ||||||||| | ||||| ||||| ||| ||||||||||||||||| || || Sbjct 7050 CCAGTCCCAGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTT 6991 Query 147116 -CTCGACTGGCGGGACT----GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAA 147170 ||| | || | || || || ||| || ||| || | ||| || ||| Sbjct 6990 GCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGT-GCT-CCTTGGCGA-GCTCCA- 6935 Query 147171 TTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGAC 147230 | || ||||| | ||| || |||| | || ||| ||| | ||||| || | Sbjct 6934 TGGAC-----GCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTC 6880 Query 147231 GGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCT 147289 | || || ||||||||| || || | | || || | || || ||||| | ||||| Sbjct 6879 GCGGGCCTCGTCGCTCTCG-AACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGACCCT 6821 Query 147290 GGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGAT 147349 | | ||||| |||||| || || || ||||||||||| || || ||||| | Sbjct 6820 GCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCCGGGATGGGGT 6761 Query 147350 AGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGA 147409 ||| |||| || || | |||||| ||||| ||| || || || || || | || Sbjct 6760 AGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACCTTGGTGATGTCGTAGA 6701 Query 147410 GTTTCTCGAAATCATAAGTCCCGTCTTCG-ACACGTACGCATTGGTTCACGGCGATAGAC 147468 | |||| || ||| | ||| ||| ||| ||| || |||| || ||||| ||| Sbjct 6700 GCTTCTTAAAGTCAAACGTCTTGTCGTCGTTCACAAAC---TTGG-ACAGCGCGATGGAC 6645 Query 147469 GCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAG 147527 || || ||||| ||||| ||| || |||| || |||||| | | ||| ||| || Sbjct 6644 GCGAGGTTGCACACGGCGACCTCGTCTGGCGACG-TGTACTCGAGCACCTCGCAGCAAAG 6586 Query 147528 GTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTT 147587 |||||| | || || | || ||||| || || || ||||||| ||| || Sbjct 6585 GTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTT 6526 Query 147588 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAG 147644 | | ||||||||||| ||| ||||||| || | || | ||| |||| || Sbjct 6525 GTACAGCATGTACGGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAACC---AGAG 6469 Query 147645 GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCG 147704 | |||||| || | | || || ||||||||| || |||||| | | ||||| | Sbjct 6468 CTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGC 6409 Query 147705 CTCAAACTCGTCGCCGTAGCAATCG-GCAAGG--CCGGGACACTGATGCGGACACATCAG 147761 ||| ||||||||||| | ||| | || | ||||| | || | ||| || | || Sbjct 6408 CTCGAACTCGTCGCCCCA--CGTCGTGTAAAGCCCCGGGGC-CTCGTTCGGGCAGAAGAG 6352 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 |||| | ||| || | ||||| ||| || |||||||| | ||||| ||||| Sbjct 6351 GCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTA 6292 Query 147822 CATAAGAT--CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCAC 147878 | |||| || || | || | |||| || ||| || | | | | || Sbjct 6291 GAACAGATCACGAGCACGATGGA--GCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAAC 6234 Query 147879 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT--- 147935 | | ||||||| |||||||| || || | ||| | || | || || || ||||| Sbjct 6233 TCGA-AGATGTCCGCGTGCCACGGCTCGAGGTACATCGCGAACGAGCCCTTGCGCTTGCC 6175 Query 147936 TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCC 147995 ||||||||||| || | |||| || ||| ||| |||||||| | ||| || | || || Sbjct 6174 GCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGTCC 6115 Query 147996 GCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTT 148055 | ||| | |||||| ||| ||| | | | ||| || | | ||||||| | Sbjct 6114 GTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCT 6055 Query 148056 AACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTA 148112 || || ||||||||| | |||| || ||| ||||| | || | |||| ||| Sbjct 6054 CACACCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT-GCTTGAGCGTGTC--GTA 5998 Query 148113 GATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT 148172 |||||| ||||| ||||| || | | | |||| || || || | | ||||| Sbjct 5997 GATGCCCTCGATCGAGTCGTCCTTCATGGCCAGCAGGAAGCAAGACGAGAGCTGCGGGCG 5938 Query 148173 CCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CA 148231 | |||| || || || || || || |||||||||| || || |||| ||| | Sbjct 5937 CGGCGTGCCAGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA 5878 Query 148232 TGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCA 148291 || |||||||| | ||| | |||||||||| ||| ||||| | |||||||| | Sbjct 5877 CTCG-TACGTCTCGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACAGCGACGCGGA 5819 Query 148292 TGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTT 148351 | ||| ||||| || || || || || | | || || || || || | Sbjct 5818 GAATCATCTGCTGCGGGCGCTCCGCGACCTTGCCGCCGACGCGCAGCAGGTACGACTTCT 5759 Query 148352 CGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 |||| || ||| | |||||||| | ||| || ||||| | |||| Sbjct 5758 CGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAATCGCGGTCGT 5714 >seq683 Length=21216 Score = 242 bits (268), Expect = 4e-59 Identities = 1173/1835 (64%), Gaps = 43/1835 (2%) Strand=Plus/Plus Query 146585 TGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATTGTGAATCGAA 146643 |||| | || |||||||| || |||||||| | || ||| | || ||| ||||| Sbjct 18587 TGCGGAGGTAGTACATGCCGGTCTTGAGGCC-CTTCTTCCATGCGTAGAAGTGCATCGAC 18645 Query 146644 GTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATG 146703 || | || | ||| || || || | | | || | ||| ||||| || ||| Sbjct 18646 GTGAGCTTGCTGATCGTTGGATCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATG 18705 Query 146704 AAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTTCCCAAGCGGT 146762 | || ||||||||| ||||| || | || | | ||||| ||| || ||||| |||| Sbjct 18706 TAGGCACCGCGGTCGGCGGCCATGTCCAGCACGGCCTTTTG-CTTGATCTCCCACACGGT 18764 Query 146763 TTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTG 146822 |||||| | |||| || || || || | | ||| |||| ||||| | || Sbjct 18765 CTTGTACTTCTCCTTGACCGCGTCGGGGATCACACGCACGTTCTGAACCGAGCCGTGGTC 18824 Query 146823 CGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAAT 146882 | || ||| || | |||||||| | | || | ||||| || | || Sbjct 18825 ATGTAGGATCTGGTTGCGCACCTCGGGCGTCCAGATTCCCAGCTCGATGAGCTCCTTCAT 18884 Query 146883 TAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCT 146942 | |||| || || | ||||||||| || ||||| || | | |||| ||| | Sbjct 18885 GAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGT 18944 Query 146943 AGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCAT 147002 ||||| ||||||| ||||| || ||||| | || || || || | ||| || ||||| Sbjct 18945 CGTGAACGGCTCAATCGACTCGTTGTTGCCAAGAATCTGCGCAGTCGATGCCGTTGGCAT 19004 Query 147003 GTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTG 147062 ||| | || || || || |||| ||| ||| || | || |||| | | Sbjct 19005 AGGCGCGAGCAGCAGCGAGTTGCGCACACCATACTGCTTGACGCTGGCCTTGAGCGCCGC 19064 Query 147063 CCAGTCCCACAT---CGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCG 147119 ||||||||| | ||||| ||||| ||| |||||||||||| |||| | ||| Sbjct 19065 CCAGTCCCAGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTATTGGAAGATGCCTTT 19124 Query 147120 ACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCT 147179 || | || ||| | | | | || |||| || || | ||| | Sbjct 19125 GCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGTGCTCCTTGGCGAGTTCCATGGA 19184 Query 147180 TGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTC 147239 ||||| | ||| || |||| | || ||| ||| | ||||| || || || || Sbjct 19185 CGCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGTTCGCGGGCCTC 19244 Query 147240 TTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGAC 147299 ||||||||| | || | || || | ||| || ||||| | |||||| | ||| | Sbjct 19245 GTCGCTCTCGAACGGATGGCCCATGAGAATAAACGCGTCGGCGAGACCCTGCACACCAAT 19304 Query 147300 GCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGC 147358 |||||| || || || ||||||||||| || ||| | || || |||| |||| Sbjct 19305 GCCGATCGGGCGGTGGCGCATGTTGCTGCGCTCGGC-CTCTGGGATTGGGTAGTAGTTGA 19363 Query 147359 GATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGA 147418 || || | |||||| | ||| ||| || || || || || | ||| |||| || Sbjct 19364 TGTCGATGACCTTGTTCAAGTTGCGCGTCACGACCTTGGTGATGTCGTAGAGCTTCTTGA 19423 Query 147419 AATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTG 147477 | ||| | || ||| ||| ||| || |||| || ||||| ||||| || ||| Sbjct 19424 AGTCAAACGTTTTGTCGTCGTTCACAAAC---TTGGA-CAGCGCGATGGACGCGAGGTTG 19479 Query 147478 CAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCA 147536 || ||||| ||| |||| || || |||||| | | ||| ||| |||||||| | Sbjct 19480 CACACGGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCGCAGCAAAGGTTGCTCGA 19538 Query 147537 TTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCAT 147596 || || | || ||||| || || || ||||||| ||| ||| | ||||| Sbjct 19539 GCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCAT 19598 Query 147597 GTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGC 147653 ||| || ||| ||||||| || | || | ||| |||| || | ||| || Sbjct 19599 GTATGGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGAGCTG---CTGTGC 19655 Query 147654 TCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTC 147713 || | | || || ||||||||| || |||||| | | ||||| | ||| ||||| Sbjct 19656 GCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTC 19715 Query 147714 GTCGCCGTAGCAATCG-GCA-AGGCCGGGACACTGATGCGGACACATCAGCGACCACATG 147771 ||| || | ||| | | || || || || || || || | || |||| | Sbjct 19716 GTCACCCCACG--TCGTGTAGAGACCCGGTGCCTCATTGGGGCAGAAGAGGCTCCACTCG 19773 Query 147772 TCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCG 147831 ||| || | || || ||| || |||||||| | ||||| ||||| | ||||| Sbjct 19774 CCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCA 19833 Query 147832 CG--CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTATAGATG 147888 || ||| || | |||| || ||| || | | || | | | | |||| Sbjct 19834 CGGGCGCGATGGAG--CTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AGATA 19890 Query 147889 TCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC---CTGG 147945 || |||||||| ||||| | ||| | || | || || || ||||| ||||| |||| Sbjct 19891 TCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGG 19950 Query 147946 TCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTG 148005 || || | |||| || ||| |||||||||||| | ||| || | |||||| ||| | | Sbjct 19951 TCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGACGAG 20010 Query 148006 CCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATG 148065 ||||| ||| ||| | | | ||| || | | ||||||| | || || ||| Sbjct 20011 CCGTTCGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATG 20070 Query 148066 CCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATG 148125 |||||| | |||| || ||| ||||| | || || ||||||||| ||||| Sbjct 20071 CCGCCGGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATC 20130 Query 148126 CTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCC 148185 ||||| || | | |||||| || || || ||| |||||| | |||| ||||| Sbjct 20131 GAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCG 20190 Query 148186 GAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CATGCGATACGTCTC 148244 || || || || |||||||||| || || |||| ||| | || |||||||| Sbjct 20191 TTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCG-TACGTCTC 20249 Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304 | ||| | || ||||||| ||| ||||| | |||||||| | | ||| ||||| Sbjct 20250 GAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTG 20309 Query 148305 TGGTCGTTCGGC-AACTTG--ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTT 148361 || || || || | |||| | | | | || ||||| || ||||| || || Sbjct 20310 CGGGCGCTCCGCGACCTTGCCACCGACGCGC---AGCAGATACGACTTCTCGAGCGTCTT 20366 Query 148362 GTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 | | |||||||| | ||| |||||||| | |||| Sbjct 20367 GAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGT 20401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476508269853720