Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq456 123 3e-23 seq14351 91.5 1e-13 seq1872 91.5 1e-13 seq7289 87.8 2e-12 seq7513 82.4 8e-11 >seq456 Length=26154 Score = 123 bits (136), Expect = 3e-23 Identities = 958/1525 (63%), Gaps = 57/1525 (4%) Strand=Plus/Plus Query 7470 CCACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTT 7529 |||||| ||||||| ||| ||| || |||| | | || || | | || ||| | Sbjct 5712 CCACGACCGCGATTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCT 5771 Query 7530 GTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGT 7589 | || || |||| | |||||| || || || ||| | | ||||| || || Sbjct 5772 GCTGCGCGTCGGCGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGT 5831 Query 7590 GGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAA 7649 ||||| ||| | ||||| |||||||| | || |||||| | ||||| | | Sbjct 5832 CGGCATCCACAAGCACGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTC---GCA 5888 Query 7650 ACAGTTT----ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT-CAA 7704 | || || |||||||| |||| || ||||| ||| ||||| |||||| || Sbjct 5889 A-AGCTTCTTCACGCACGCGACGCCGACGCTGTTTAACGCTGGCACGC-CGCGCCCGCAG 5946 Query 7705 TTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACG 7764 | || || || || |||| ||||| || ||| ||||| ||||| ||| ||||| Sbjct 5947 CTCTCGTCTTGCTTCCTGCTGGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACG 6006 Query 7765 CTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGAC 7824 || | |||||| || ||||| | | |||||| || ||| ||| ||| || || Sbjct 6007 CTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAAC 6066 Query 7825 GTGCGCGCCAACGGTAGCCG--CATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 | ||||||| | | || |||| ||| ||||| | | ||| | | || Sbjct 6067 ATCCGCGCCACCA--ACTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGACTCGTGC 6124 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCA 7939 | ||| | ||||||||||| || ||| ||| | || |||||||| || ||||||| Sbjct 6125 CGATGCTCCGCGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCA 6184 Query 7940 AAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATC 7999 | ||| | || || || | |||||||||||||||||||| | || | || | | Sbjct 6185 AGGGCTCGTTCGCGATGTACCTCGAGCCGTGGCACGCGGACATCTTCGAGTTCCTCGACC 6244 Query 8000 TGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | ||| ||| ||| | || || ||||| |||| || ||||| Sbjct 6245 TCAAGAAGAACCACGGTAACGAGCTCCATCGTGCTCGTGATCTGTTCTACGCCATGTGGA 6304 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || ||||| || |||| |||||| | | ||| | ||| ||| | || |||| Sbjct 6305 TCCCGGATCTCTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTG-CCCG 6363 Query 8120 ATCGTTGCCC---TTTATTAAAAAACGTTTACGGTTCAA--AATTTGAACAATTGTACAA 8174 | || |||| ||| | |||| || | | | || || ||||| | Sbjct 6364 AACGAGGCCCCGGGGCTTTACACGACGT----GGGGCGACGAGTTCGAGGCGCTGTACCA 6419 Query 8175 ACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCG-ACCTGCACCG-- 8231 || ||||| | || ||| || || || ||||| | |||||| | | || | | Sbjct 6420 CCAGTACGAGAAGGAGGGC-CG--CGCGC-GCAAGACGATCCGCGCGCAGCAGCTCTGGT 6475 Query 8232 -CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTT 8290 ||| || |||| | ||| | ||| || || | |||||||||||||||||| ||| | | Sbjct 6476 TCGCGATCCTCGAGTCTCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGT 6535 Query 8291 GCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTG 8350 ||||| ||| || || ||| | ||||| || | | ||||| || ||| | Sbjct 6536 GCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGCG 6595 Query 8351 AAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCG----TCGGTG 8406 | | | |||||| |||| ||||| || ||||| ||||| || ||| ||| Sbjct 6596 AGGTGCTCGAGTACACGTCGCCAGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGC 6655 Query 8407 TGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTT--GAA-CAATTGAAA 8463 ||| || ||| | ||| ||||| || || | |||||| ||| | | | Sbjct 6656 TGTCCAA----GTTTG-TGAACGACG--ACAAGACGTTTGACTTTAAGAAGCTCTACGAC 6708 Query 8464 AACGCCGTGCAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCC 8523 | | || | |||||| ||||| | | |||| || |||| | || ||| Sbjct 6709 ATCACCAAGGTCGTGACG---CGCAACCTGAACAAGGTCATCGACATCAACTACTACCCC 6765 Query 8524 TTGGAAGAAG-CGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGG 8582 | || | || ||| | | ||| |||||||| | || | ||| | || ||||| || Sbjct 6766 ATCCCGGAGGCCGAGCGCAGC-AACCTGCGCCACCGCCCGATCGGCATCGGTGTGCAGGG 6824 Query 8583 TCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCT 8642 ||| ||||||||||| | || ||| | | | ||| ||| | || || ||| ||| Sbjct 6825 TCTCGCCGACGCGTTCATTCTCATGGGCCACGCGTTCGAGAGCGACGAGGCCCGCGAGCT 6884 Query 8643 CAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGC 8702 ||||| || || || ||| |||| | ||| || | || || | | || || Sbjct 6885 CAACAAGAACATCTTCGAGACGCTGTACTTCGGTGCGATGGAGGCGTCCATGGAGCTCGC 6944 Query 8703 CCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCA 8762 | || ||| |||| | || | |||| ||| | ||| || || || || Sbjct 6945 CAAGGAGCACGGCCCGTATGCCAGCTATGAGGGCTCCCCGGTGAGCAAGGGCATCTTCCA 7004 Query 8763 ATACGACATGTGGAATGTCACGCCCACCTC---TTTGTGGAATTGGAGCGATTTGAAACG 8819 |||||||||||| |||||||| || || | ||| | ||| | | || Sbjct 7005 GTACGACATGTGGGGCGTCACGCCGACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGC 7064 Query 8820 CAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCAC 8879 || | || | ||| ||||||| |||||| || | || |||||| || || | Sbjct 7065 CAGCGTCAAGCAGTACGGCGTGCGCAACTCGCTGCTGCTCGCGCCCATGCCGACGGCGTC 7124 Query 8880 GACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGT 8939 ||| || || || | || |||||||| || | ||||||||||| | |||| ||||| Sbjct 7125 GACCGCGCAGATTCTTGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAA 7184 Query 8940 GAGACGAGTGTTGGCCGGCGATTTT 8964 | || ||| | |||||||| ||| Sbjct 7185 CCGCCGCGTGCTCGCCGGCGAGTTT 7209 >seq14351 Length=379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| | ||| | Sbjct 225 AGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 284 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||||| || || ||||| || Sbjct 285 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCC 344 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || || || || || || ||||| Sbjct 345 TTGTCCTGGATCTTCTGCTTGAC 367 >seq1872 Length=9383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| ||||| || ||||| || |||||||||| || || | ||| | Sbjct 9268 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGC-GTGCG 9326 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC 134611 | ||| || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| Sbjct 9327 ACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCC 9383 >seq7289 Length=1152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || || |||| ||||||||||| || || ||||| || || || || || || Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 134631 TGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || ||||| || ||||| |||| || | || |||||||| || || || || ||||| Sbjct 1092 TGCTTGACATTGT-CAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 1034 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 | ||| || ||||| || ||||| || Sbjct 1033 CAGAGTCTTGACGAAGATCTGCATCTT 1007 >seq7513 Length=1086 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || || |||| ||||||||||| || || ||||| || || || || || || Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 134631 TGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || ||||| || ||||| | || || | || |||||||| || || || || ||||| Sbjct 61 TGCTTGACATTGT-CAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 119 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 | ||| || ||||| || ||||| || Sbjct 120 CAGAGTCTTGACGAAGATCTGCATCTT 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505289252898040