Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18 159 5e-34 seq26 105 9e-18 >seq18 Length=85926 Score = 159 bits (176), Expect = 5e-34 Identities = 377/562 (67%), Gaps = 23/562 (4%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || ||||||||||| | || | ||| || || || |||| Sbjct 69264 GCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGAAGCTGAG 69205 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 |||||||| ||||||||||| ||||||||||| || | |||| || |||||||| |||| Sbjct 69204 GCCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCG-AGCAGAAGGATCCAGAGAAGA 69146 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA----CTTG-TATCATT 39789 |||| || || || || ||||| || |||| | ||||| || | | | | Sbjct 69145 AGATACCCTCGACGGCCGCAAAGGCGACAA--TGCGCTCCGCAAACGCCGCGCGACGAGA 69088 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||||| | ||||| | || ||||||| |||||||| || || || || || Sbjct 69087 GTCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTCAATCGC 69028 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCT-----TTAACATATGTATCTATTAACAGA 39904 || || || ||| || | ||| || | || || || || | ||| Sbjct 69027 -----GCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAGC 68973 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 |||| || || |||||||| || || || ||||| || ||||| || || | ||| Sbjct 68972 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCC 68913 Query 39965 TCAGTAATTTGTACCT--CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| | || |||| ||| || || | || | ||||| || || || || | Sbjct 68912 TCAGGGACCTGCACCTCGCTGCTGAAGTTCAT--GGCGAGGTTTTCGTTGACAATGCCGT 68855 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| ||||||||||| || | ||||| || || ||||| |||| | || | | Sbjct 68854 CACTGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATAGCGCTCATTGTCCGTGAGGT 68795 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||||| |||| || | | ||| | || || || ||||| || ||||| Sbjct 68794 TGTTCCAGTCCTTGAGGTCGTGCACCAGATCAATCTCCTCGGCCGTCCAGAAGCTCGCCT 68735 Query 40143 CTGCCTTTTTGTACATGTTCCA 40164 | ||||| |||||||| | ||| Sbjct 68734 CGGCCTTCTTGTACATCTGCCA 68713 >seq26 Length=77529 Score = 105 bits (116), Expect = 9e-18 Identities = 365/562 (65%), Gaps = 23/562 (4%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || ||||||||||| | || | ||||| || || |||| Sbjct 7965 GCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAG 8024 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || |||||||| |||||||| || || | |||| || || || || |||| Sbjct 8025 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCG-AGCAGAAGGAGCCCGAGAAGA 8083 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA----CTTGTATCATTA 39790 ||||||| || || || || || || |||| | ||||| || | | | | Sbjct 8084 AGATGCCCTCGACGGCCGCGAAGGCGACAA--TGCGCTCCGCAAACGCCGCGCGGCGCGA 8141 Query 39791 -TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | |||||| | ||||| | || ||||||| || ||||| || || || || || Sbjct 8142 GTCGCACCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTCTCAATCGC 8201 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCT-----TTAACATATGTATCTATTAACAGA 39904 || || || ||| || | ||| || | || || || || | ||| Sbjct 8202 -----GCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAGC 8256 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||| || || |||||||| || || || ||||| || ||||| || || | || Sbjct 8257 GAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGCGCC 8316 Query 39965 TCAGTAATTTGTACCT--CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 || | | || |||| ||| || || | || | || || || || || || | Sbjct 8317 TCCGGGACCTGCACCTCGCTGCTGAAGTTCAT--GGCGAGGTTCTCGTTGACAATGCCGT 8374 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| |||||||| || || | || || || || || || || | | || | | Sbjct 8375 CACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGAGGT 8434 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||||| |||| || | | ||| | ||||| || ||||| || ||||| Sbjct 8435 TGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCAGTCCAGAAGCTCGCCT 8494 Query 40143 CTGCCTTTTTGTACATGTTCCA 40164 | ||||| |||||||| | ||| Sbjct 8495 CGGCCTTCTTGTACATCTGCCA 8516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686760453458280