Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq683 251 9e-62 seq456 208 1e-48 seq18 143 3e-29 seq26 102 1e-16 >seq683 Length=21216 Score = 251 bits (278), Expect = 9e-62 Identities = 568/843 (67%), Gaps = 17/843 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 19543 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAT 19602 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTG-GTAC 111435 ||||| |||||||| ||||||| | ||| || || ||| | || |||| | | Sbjct 19603 GGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGA-----GCTGCTGTGCGC 19657 Query 111436 A-ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 || | ||| || || |||||| |||||||| ||| || || || ||||| | Sbjct 19658 GGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 19717 Query 111492 CACCCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 ||||| || ||| | ||||||| ||||||| | || ||||| || ||| | || Sbjct 19718 CACCCCACGTCGT-GTAGAGACCCGGTGCCTCATTGGGGCAGAAGAGGCTCCACTCGCCG 19776 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 |||| || ||||||||||| || || || ||||||| || | || ||||| | Sbjct 19777 TTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGG 19836 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGC 111669 ||| |||| ||| ||||| || | | || |||||||| | ||||||||| Sbjct 19837 GCGCGATGGAGCTCGTTACCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATATCCGC 19895 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTAC 111726 |||||| || || || || | |||| || |||||||| ||| || | || | || Sbjct 19896 GTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCAC 19955 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 |||||||| ||| ||||||| ||||| ||||| || | || || | || || || Sbjct 19956 GTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACAAGGCCGTTCGACGAGCCGTT 20015 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || || ||| || || |||| | | | || | | || || || || || Sbjct 20016 CGTGCCGCGGATATACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCC 20075 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||||||| ||||| || |||| | | || || | ||||| || | ||| ||||| Sbjct 20076 GGCCCACTTCGAGATGCATGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTC 20135 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||| | ||||||||| |||| |||||| | || || || || || || Sbjct 20136 GTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTAAA 20195 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 20196 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 20255 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 | |||||||| | | ||||||||||| ||||| || | | ||| | ||| ||| Sbjct 20256 GGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCG 20315 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 ||| || ||||| ||| || | ||||| |||||| || || |||| ||||| Sbjct 20316 CTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTTGAAGCCAAA 20375 Query 112147 GTA 112149 ||| Sbjct 20376 GTA 20378 >seq456 Length=26154 Score = 208 bits (230), Expect = 1e-48 Identities = 563/846 (67%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 6572 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 6513 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 6512 GGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 6453 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || |||||| |||||||| ||| || || || ||||| || | Sbjct 6452 GTCTTGCGC--GCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 6395 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | | || || || |||| || || ||||| || ||| | || Sbjct 6394 CCCACGTCGT-GTAAAGCCCCGGGGCCTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTG 6336 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 |||| || ||||||||||| || || || ||||||| || | || ||||| | | || Sbjct 6335 GCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGAGCA 6276 Query 111613 CC---GAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCG 111668 | |||| |||| ||| ||||| || | | || |||||||| | ||| |||| Sbjct 6275 CGATGGAGC----TCGTTACCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCCG 6221 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTA 111725 ||||||| ||||| || || | |||| || ||||| || ||| | | || | | Sbjct 6220 CGTGCCACGGCTCGAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCA 6161 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 | |||||||| ||| |||| || ||||| ||||| || | | || | || || | Sbjct 6160 CGTAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGTCCGTTCGACGAGCCGT 6101 Query 111786 TTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 | || || || || ||||| || |||| | | | || | | || || || || Sbjct 6100 TCGTGCCGCGGATGTACGAG--TTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCC 6043 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 || |||||||| ||||| || |||| | | || || | ||||| || | ||| || Sbjct 6042 GCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGA 5983 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 ||| ||||| |||| | ||||||||| || | |||||| | || || ||||| || Sbjct 5982 GTCGTCCTTCATGGCCAGCAGGAAGCAAGACGAGAGCTGCGGGCGCGGCGTGCCAGCGTT 5923 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 112023 || || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 5922 AAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAG 5863 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | || ||||| | | ||||||||||| ||||| || | | ||| | ||| || Sbjct 5862 CGCGGCGTCGATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGG 5803 Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACC 112143 | ||| || |||| ||| || | || || |||||| || || |||| || Sbjct 5802 GCGCTCCGCGACCTTGCCGCCGACGCGCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCC 5743 Query 112144 AAAGTA 112149 |||||| Sbjct 5742 AAAGTA 5737 >seq18 Length=85926 Score = 143 bits (158), Expect = 3e-29 Identities = 341/504 (68%), Gaps = 16/504 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| ||||||||||||||||| | || || | ||||| Sbjct 69548 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTCCCCTGGAGCGAGATCATGTCCATC 69489 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||| ||||| ||| | || | || | ||| |||| | ||| ||||| Sbjct 69488 CAGTCGAATGGGTTCGAGACCTTGTAGATCTTGGACACGCCAAGCGCGTGGAGAAGACGG 69429 Query 122491 TCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| |||| | ||| ||||||| | |||| |||||||| ||||| || | Sbjct 69428 TCCG-CACAGAACTCGATGTACTGGCACATGAGGGACGAGTTCATGCCGATCAGCTCCAC 69370 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | |||| | |||| | ||||| ||| || || || | ||| |||| Sbjct 69369 CGGGAGCGAGTCCTGAACGAACTCCTTCTCGATCGAGACGGCATCGCGGATGATCTCGTG 69310 Query 122610 GATA---GTTTC-GGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTC-CACGGCAAA 122663 ||| | || ||||| || | |||| | | | | ||| |||| | || Sbjct 69309 GATGCGCGACTCTGGTAG-----CTTGTTGGCAAGCTTCGAGTACAGCAGGCACG-CGAA 69256 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || |||||| |||||||| || || || |||||||| ||||||| || || ||||| Sbjct 69255 GTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGAAGCTGAGGCCAGGCAT 69196 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 |||||| |||||||| | |||| | || | |||||| || || ||||||||||||||||| Sbjct 69195 GAGACCACGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAGAGAAGAAGATACCCTC 69136 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATT 122842 || |||||| || | || ||| || || || | ||| ||| | || |||| | Sbjct 69135 GACGGCCGCAAAGGCGACAATGCGCTCCGCAAACGCCGCGCGAC-GAGAGTCGCACCACT 69077 Query 122843 TCATTGCCCATTTCGCCTTCTTCT 122866 ||| ||||| | |||||||||| Sbjct 69076 TCAGAGCCCAGTGGGCCTTCTTCT 69053 >seq26 Length=77529 Score = 102 bits (112), Expect = 1e-16 Identities = 297/451 (66%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 7681 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTTCCCTGGAGCGAGATCATGTCCATC 7740 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 | || || || ||| | || | || | ||| |||| | ||| ||||| Sbjct 7741 CAATCGAACGGGTTCGAGACCTTGTAGATCTTGGACACGCCAAGCGCGTGGAGAAGACGG 7800 Query 122491 TCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| |||| | ||| ||||||| | |||| |||||||| ||||| || | | Sbjct 7801 TCCG-CACAGAACTCGATGTACTGGCACATGAGGGACGAGTTCATGCCGATAAGCTCAAC 7859 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | |||| || |||| | ||||||||| || || || | ||| |||| Sbjct 7860 CGGGAGCGAGTCCTGGACGAACTCCTTCTCAATCGAGACGGCGTCACGGATGATCTCGTG 7919 Query 122610 GATA---GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACT 122665 ||| | |||| | | | || | || | | ||| |||| | || | Sbjct 7920 GATGCGCGACTCGGGAA---GCTTGTTGGCGAGCTTCGAGTACAGCAGGCACG-CGAAGT 7975 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | |||||| |||||||| || || || || || || ||||||| || || ||||||| Sbjct 7976 CGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGA 8035 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 | || |||||||| | ||| | || | |||||| || || ||||||||||| ||||| | Sbjct 8036 GGCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 8095 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||| || || | || ||| || || || Sbjct 8096 CGGCCGCGAAGGCGACAATGCGCTCCGCAAA 8126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627896368639200