Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq321 154 4e-32 seq167 127 6e-24 seq6470 93.3 1e-13 >seq321 Length=31345 Score = 154 bits (170), Expect = 4e-32 Identities = 914/1447 (63%), Gaps = 22/1447 (2%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | || || || || || || || | ||| ||||| || || || || || Sbjct 18449 GGTATCGATCTTGGCACGACCTACTCGTGCGTCGGTGTGTGGCAGAACGACCGCGTCGAG 18390 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || |||||| | || ||||| || ||||| || || || || || Sbjct 18389 ATTATCGCCAACGACCAGGGTAACCGCACCACGCCGTCGTACGTCGCCTTCACGGACACG 18330 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | || || | | || ||||| Sbjct 18329 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACGCCACGAACACGGTG 18270 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || || ||||| || ||||| | ||||| | | || | || |||| | Sbjct 18269 TTCGACGCCAAGCGTCTCATTGGCCGCAAGTTCAGCGACCCGATTGTC-CAGGCTGACAT 18211 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | ||||| || || || | || || || || || |||| | Sbjct 18210 CAAGCACTGGCCTTTCACGGTGTCGCCCGGCGCTGGCGACAAGCCGCAGATCACGGTTCA 18151 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 18150 GTTCAAGGGCGAGTCGAAGACG-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 18092 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| || | | | || | || | | || || || || | Sbjct 18091 AGATGCGTGAGGTCGCTGAGGCCTTTATTGGCAAGGAGGTGAAGAACGCCGTCATCACGG 18032 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || || ||||| ||| || | Sbjct 18031 TGCCCGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGACGCTGGTGCCATCGCTG 17972 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || ||||| || || || ||||| || ||||| || || || | Sbjct 17971 GCCTCAACGTGCTCCGTATCATTAACGAGCCGACGGCTGCCGCTATTGCTTACGGCCTCG 17912 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | || || |||| || || ||| | ||||| ||||| || | Sbjct 17911 ACAAGAAGGGCGGT---GAGCGCAACGTTCTCATCTTCGATCTTGGTGGCGGTACCTTCG 17855 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| ||||| || || || || || |||||||| | Sbjct 17854 ATGTGTCGCTCCTGAGCATTGAGGAGGGCATTTTCGAGGTCAAGGCTACGGCTGGTGACA 17795 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||||||||||| || || || || || ||||| || || || || || | Sbjct 17794 CCCATCTTGGTGGTGAGGACTTCGACAACCGTCTTGTCGACCACTTCACGGCTGAGTTCA 17735 Query 349923 AGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| ||||| | ||| | ||| || | | || | || || || | || Sbjct 17734 AGCG-CAAGCACCGCAAGGATCTCACGAG-CAACCAGCGTGCCCTTCGCCGTCTCCGCAC 17677 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || || || || ||||||||| | | || || | | || ||| ||||| ||||| Sbjct 17676 GGCCTGCGAGCGCGCTAAGCGTACGCTTTCGTCGTCGGCTCAGGCCTACATTGAGATTGA 17617 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || ||| ||||| || ||| || | || || ||||| || || || || | Sbjct 17616 CTCGCTTTTCGATGGTGTTGACTTCAACTCCACCATCACGCGTGCCCGTTTCGAGGACCT 17557 Query 350101 ATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 ||| || || || ||| || ||||| ||||| || || || | || || Sbjct 17556 CTGTGCTGA-CTACTT-CCGCAAGACCATGGAGCCTGTTGAGAAGGTTCTCCGTGACGCT 17499 Query 350159 AAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCA 350218 || | ||||| | ||| | |||| || || | || ||||| || || ||||| || Sbjct 17498 AAGCTCTCCAAGAGCCAGGTCCATGAGGTCGTCCTTGTGGGTGGCTCCACCCGTATCCCG 17439 Query 350219 AAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAAT 350278 || ||||| ||| | || ||||| || || || ||||| || || | | || || || Sbjct 17438 AAGGTTCAGCAGCTGCTGTCTGACTTCTTCAACGGCAAGGAGCCGTGCAAGTCGATCAAC 17379 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGGAAATAA 350337 || ||||| ||||| || | |||||| |||| ||||| | || | | | | || | Sbjct 17378 CCTGATGAGGCTGTCGCCTTTGGTGCCACTGTCCAGGCTGCCATCCTCAGCGGCAACGAT 17319 Query 350338 GAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| | || | | ||||| | || || ||||| || || |||||||| || | Sbjct 17318 CAGTCGGAGAAGCTCCAGGATCTGCTCCTTCTCGATGTGACGCCTCTTTCGCTCGGTCTT 17259 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || | |||| || ||||| || || || | || | || || || || || Sbjct 17258 GAGACGGCCGGTGGTGTGATGACGACGCTGATCCCGCGCAACACGACGGTGCCGACCAAG 17199 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || || || || || | || || || ||||| | || || || || || Sbjct 17198 AAGACGCAGACGTTCTCGACGTACGCCGACAACCAGCCTGGTGTGCTTATCCAGGTGTTC 17139 Query 350516 GAAGGTGAACGTGCTCG--CACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTG 350573 || || || | ||||| ||| || || || || || | || | ||| | Sbjct 17138 GAGGGCGA--GCGCTCGATGACTCGCGACAACAACCTCCTCGGCAAGTTCAACCTCGACG 17081 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 || || || ||||| | || || || ||||| || ||| | |||||||| ||| | | Sbjct 17080 GTATCCCGCCGATGCCGCGTGGTGTGCCGCAGATCGATGTCACGTTCGATATCGATGCCA 17021 Query 350634 ATGGTAT 350640 | ||||| Sbjct 17020 ACGGTAT 17014 >seq167 Length=39943 Score = 127 bits (140), Expect = 6e-24 Identities = 658/1038 (63%), Gaps = 14/1038 (1%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| || || || | |||||| || || || |||||| Sbjct 18380 GCCGTCATCACGGTCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCT 18321 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||| || || | || || || | || ||||| || || || ||||| || ||| Sbjct 18320 GGTGCCATCGCTGGCCTCAACGTGCTCCGTATCATTAACGAGCCTACGGCTGCCGCTATT 18261 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | | ||| || || |||| || || ||| | ||| Sbjct 18260 GCTTACGGCCTCGACAAGAAGGGTGGT---GAGCGCAACGTTCTCATCTTCGATCTTGGT 18204 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || ||||| || ||||| || || || | |||| ||||| ||||| || || || || Sbjct 18203 GGCGGTACCTTCGATGTGTCGCTCCTGAGCATTGAGGAGGGCATTTTCGAGGTCAAGGCT 18144 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || |||||||| || ||||||||||| || ||||| || || || ||||| || || Sbjct 18143 ACGGCTGGTGACACCCATCTTGGTGGTGAGGATTTCGACAACCGCCTCGTCGACCACTTC 18084 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGC 349967 || || ||||| ||||| | ||| | ||| || | | || | | Sbjct 18083 ACGGCCGAGTTCAAGCG-CAAGCACCGCAAGGATCTCACGAG-CAACCAGCGTGCCCTTC 18026 Query 349968 GTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCT 350027 | || || | || || || || || |||||||| | | || || | | || ||| Sbjct 18025 GCCGTCTCCGCACGGCCTGCGAGCGCGCTAAGCGCACGCTTTCGTCGTCGGCTCAGGCCT 17966 Query 350028 CTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 || || ||||| || || ||||| || ||| || | || || ||||| | Sbjct 17965 ACATCGAGATTGACTCGCTGTTCGATGGTGTTGACTTCAACTCCACGATCACGCGTGCCC 17906 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGT 350145 | || || || | || ||| || || ||| || ||||| ||||| || || || Sbjct 17905 GTTTCGAGGACCTCTGCGCGGA-CTACTT-CCGCAAGACCATGGAGCCTGTTGAGAAGGT 17848 Query 350146 ATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205 | || || || | ||||| | ||| | | || || || | || ||||| || Sbjct 17847 TCTCCGTGACGCCAAGCTCTCCAAGAGCCAGGTCCACGAGGTCGTCCTTGTCGGTGGCTC 17788 Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265 || ||||| || || || || ||| | || || || || || || ||||| || || | Sbjct 17787 CACCCGTATCCCGAAGGTGCAGCAGCTCCTGTCGGACTTCTTCAACGGCAAGGAGCCCTG 17728 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TT 350324 | || || || || ||||| ||||| || | ||||| |||| ||||| |||| | Sbjct 17727 CAAGTCGATCAACCCTGATGAGGCTGTCGCCTTCGGTGCCACTGTCCAGGCTGCTATCCT 17668 Query 350325 TATCTGGAAATAAGAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACT 350382 | | | || | ||| | || | | ||||| | || || ||||| || || || Sbjct 17667 CAGCGGCAACGATCAGTCGGAGAAGCTCCAGGATCTGCTCCTCCTCGATGTGACGCCTCT 17608 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 ||||| || | || || | |||| || ||||| || || || | || | || Sbjct 17607 GTCGCTCGGTCTTGAGACGGCCGGTGGTGTGATGACGACGCTCATCCCCCGTAACACGAC 17548 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC 350502 || || || || ||| | || || || || || | || || || ||||| | || Sbjct 17547 CGTGCCCACGAAGAAGACGCAGACGTTCTCGACGTACGCCGACAACCAGCCTGGTGTGCT 17488 Query 350503 AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATT 350562 || || || || || ||||| ||| | || || || || || || | || Sbjct 17487 TATCCAGGTCTTCGAGGGTGAGCGTTCGATGACGCGCGACAACAACCTCCTCGGCAAGTT 17428 Query 350563 TACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGA 350622 | ||| | || || || ||||| | || || || ||||| || ||| | ||||| Sbjct 17427 CAACCTTGACGGTATCCCGCCGATGCCGCGTGGTGTGCCCCAGATCGACGTCACGTTCGA 17368 Query 350623 TATTGATTCAAATGGTAT 350640 ||| || | || ||||| Sbjct 17367 TATCGACGCCAACGGTAT 17350 >seq6470 Length=1437 Score = 93.3 bits (102), Expect = 1e-13 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 235887 TAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCA 235946 || |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| Sbjct 1359 TATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCG 1418 Query 235947 AAACCCAGCATCTCCA 235962 | ||||||| |||||| Sbjct 1419 ATACCCAGCTTCTCCA 1434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514918980918431