Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq1125 176 2e-39 seq1291 134 7e-27 >seq1125 Length=14513 Score = 176 bits (194), Expect = 2e-39 Identities = 335/494 (68%), Gaps = 21/494 (4%) Strand=Plus/Plus Query 66248 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66307 ||||||||| ||||| || | ||| | | ||||||||| |||||| || ||| |||| Sbjct 9232 CATCGACGCCGAGCATGCCATCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGA 9291 Query 66308 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367 | | ||| | ||||| ||| | ||||||||||| || ||||||| ||| || Sbjct 9292 CGAGCTCTACATCTCCCAGCCCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCT 9351 Query 66368 CGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCG 66425 ||| ||| ||| || ||| | | |||||||| ||| ||||| || || |||||| Sbjct 9352 CGTGCGGTCGGGC--GCCGTCGACGTGGTCGTCGTCGACAGCGTGGCCGCGCTCGTGCCG 9409 Query 66426 CGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 66485 ||||||||||| |||||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 9410 CGCGCCGAGCTGGAAGGCGAGATGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATG 9469 Query 66486 TCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTC 66542 ||||| ||||||||||||| ||| | | || |||| || ||| | || Sbjct 9470 AGCCAGGCGCTGCGCAAGCTCACGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TC 9526 Query 66543 TGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACC 66602 | | |||||| | ||| |||| | |||| | | || |||| || |||| ||| Sbjct 9527 TTTCTGAACCAGATCCGCCAGAAAGTGGGCATCAT---CTTCGGCTCGCCCGAGGTCACG 9583 Query 66603 ACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCC 66662 ||||||||| ||| || | | |||||| || ||||| | || | ||| Sbjct 9584 TCGGGCGGCACGGCGCTGCGCTACTACGCGTCCGTCCGGCTCGACAT--------TCGNN 9635 Query 66663 ACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAAC 66722 ||||||||| ||| ||||||||| | | || ||||| | ||||||| Sbjct 9636 NNNNNNNNGGAAGGCGACAAGGTCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAAC 9695 Query 66723 AAGCTGGCCCCGCC 66736 ||||| || |||| Sbjct 9696 AAGCTCGCGTCGCC 9709 >seq1291 Length=13138 Score = 134 bits (148), Expect = 7e-27 Identities = 239/347 (69%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 66393 GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGG 66452 |||||||| ||| ||||| || || ||||||||||||||| | |||||||| || || Sbjct 8041 GTCGTCGTCGACAGCGTGGCCGCGCTTGTGCCGCGCGCCGAGTTGGAAGGCGAGATGGGC 8100 Query 66453 GACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGC 66512 ||| || ||| ||||| ||||| |||||| ||||| ||||||||||||| ||| Sbjct 8101 GACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGC 8160 Query 66513 ACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 66569 | | || |||| || ||| | ||| | |||||| | ||| |||| || Sbjct 8161 TCACTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCAGAAAGTC 8217 Query 66570 GGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 66629 |||| | | || |||| || |||| ||| ||||||||| ||| || | | |||| Sbjct 8218 GGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCGCTACTAC 8274 Query 66630 GCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 66689 || || ||||| | || | || |||| || | || || ||||| ||| ||| Sbjct 8275 GCGTCCGTCCGGCTCGACATTCGCCGCAAGGCGGCGATCAAAGAGGGCGACAAGGTCGTC 8334 Query 66690 GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 |||||| | | || ||||| | |||||||||||| || |||| Sbjct 8335 GGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGCGTCGCC 8381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240909262634100