Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7289 114 3e-20 seq14351 113 1e-19 seq7513 111 4e-19 seq683 104 5e-17 seq1843 93.3 1e-13 seq1170 93.3 1e-13 seq4251 87.8 4e-12 >seq7289 Length=1152 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| ||||| || || || ||||| | || ||||||||||||||||| Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || ||| |||| || || || ||||| ||||||||||| || || Sbjct 1092 TGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 1033 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| || || | |||||| || Sbjct 1032 AGAGTCTTGACGAAGATCTGCATCTT 1007 >seq14351 Length=379 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 231 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 290 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || ||||| | || ||||||||| Sbjct 291 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 350 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATG 211049 |||||||| || || || || || ||| Sbjct 351 TGGATCTTCTGCTTGACATTGTCAATG 377 >seq7513 Length=1086 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| ||||| || || || ||||| | || ||||||||||||||||| Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || ||| | || || || || ||||| ||||||||||| || || Sbjct 61 TGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 120 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| || || | |||||| || Sbjct 121 AGAGTCTTGACGAAGATCTGCATCTT 146 >seq683 Length=21216 Score = 104 bits (114), Expect = 5e-17 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| ||| || |||| ||||| || || || |||||||||| | ||| Sbjct 19641 CCAGAGCTGCTGTGCGCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTA 19700 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATC--GAGACCGGGAGCCTCATTGGGGCAG 178297 ||| ||||||| || ||| || || | |||||| || ||||||||||||||| Sbjct 19701 CAGCGCCTCGAACTC--GTCACCCCACGTCGTGTAGAGACCCGGTGCCTCATTGGGGCAG 19758 Query 178298 AAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATG 178357 ||||| ||||||| |||| ||| ||||| ||||||||||| || | | |||| ||| Sbjct 19759 AAGAGGCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATG 19818 Query 178358 GCATAGAA 178365 || ||||| Sbjct 19819 GCGTAGAA 19826 >seq1843 Length=9525 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | ||||| Sbjct 3049 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCC 3108 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| |||||||| ||||| || || || ||||||| |||| Sbjct 3109 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGAGGAATTCCT 3159 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| | || || || || ||| |||| || || || || Sbjct 3232 CCCTCCTTGTCCTGGATCTTGTTCTTGACATTGTCAATGCTGTCGGACGGCTCGACGTCC 3291 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||||||||| |||||||| ||||| || || | ||||||||| || Sbjct 3292 AGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTCTG 3341 >seq1170 Length=14133 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | ||||| Sbjct 11114 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 11055 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| |||||||| ||||| || || || ||||||| |||| Sbjct 11054 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATTCCT 11004 >seq4251 Length=3062 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || |||||||| ||||| | ||| || || || || || Sbjct 1 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 60 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| |||||||| || || | |||||| Sbjct 61 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158895408302105