Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3299 190 5e-43 seq4702 140 8e-28 seq7419 113 1e-19 seq7291 102 2e-16 seq7289 102 2e-16 seq17074 100 7e-16 seq7513 96.9 8e-15 seq4251 84.2 5e-11 >seq3299 Length=4546 Score = 190 bits (210), Expect = 5e-43 Identities = 212/283 (75%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 |||||||||| ||||||| ||||||||| | ||||||| | ||| ||| | | |||| Sbjct 3623 TATATTTAATTTTTGGTGCTTTTTCTGGTGTAGTAGGTACAACATTATCTCTTTTAATAA 3564 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || ||| || | || || | Sbjct 3563 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATATAATG 3504 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 || || |||| || || || ||| | |||||||||||| | || ||||| || | || | Sbjct 3503 TTGTTGTTACCGCACACGCTTTTTTAATGATTTTCTTTATGGTAATGCCTATTTTAATTG 3444 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || ||||| || || ||||||||||| |||||||||||||||||||| || | Sbjct 3443 GTGGTTTTGGTAATTGGTTTGTACCTTTAATGATAGGTGCTCCTGATATGGCTTTCCCTA 3384 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| ||||| || ||| |||| ||||| ||||| Sbjct 3383 GAATGAATAATATTAGTTTCTGGTTATTACCTCCTTCTTTATT 3341 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||| || || |||||||||||||| | | ||||| ||||| ||||| Sbjct 2944 TTCAGGGTGACCAAAGAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCTGA 3003 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| | || |||||| || |||||||||||||| |||| Sbjct 3004 TGGATCATAGAAAGAAGTATTTAAGTTTCTATCAGTTAATAACA 3047 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | || ||| Sbjct 3122 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAAGAAAA 3181 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||| | | |||||||||||| || |||||||| Sbjct 3182 TTAATAGCACCTAATAATGATGAAATACCAGATAAATGTAAACTAAAAATAGCTAAATCT 3241 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || || || ||||| || || Sbjct 3242 ACTGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGATATACTGTCCAACCT 3298 Query 371542 GT 371543 || Sbjct 3299 GT 3300 >seq4702 Length=2586 Score = 140 bits (154), Expect = 8e-28 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || |||||||| |||||||||||||| ||||| Sbjct 571 GAAAATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATAAGCAGAAACGTCACC 630 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| ||||||| ||| |||||||| | |||||||| Sbjct 631 AGCTTGAGTTTCAATAACAGGTAAAGCTGTTAATGAACCACCACCTATTTTTTTATT 687 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || || | |||| | | || ||||| |||||||||| | |||| |||||||||||||||| Sbjct 905 CACCATTACAATTCTTAGCTCCATATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATA 846 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 | |||||||||||| |||| |||| ||||||||| |||||| Sbjct 845 ACGGTAAACATGCTGTAATTTTCTATGATGATTTATCAAAACAA 802 >seq7419 Length=1114 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 113 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 55 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 54 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 11 >seq7291 Length=1152 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 754 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 813 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 814 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 873 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 874 AACGCGTTAGCTTGAT--ATCTAAAAA 898 >seq7289 Length=1152 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || || || || || || || || || |||||||| |||||||| Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| ||| || ||| |||| || | || ||||| | ||||||||||||||| ||| Sbjct 1092 TGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 1033 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 | ||| || | ||| | ||||| || Sbjct 1032 AGAGTCTTGACGAAGATCTGCATCTT 1007 >seq17074 Length=304 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 210 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 269 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 270 TAACATGATGTATAGGGTCTGACAC 294 >seq7513 Length=1086 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || || || || || || || || || |||||||| |||||||| Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| ||| || ||| | || || | || ||||| | ||||||||||||||| ||| Sbjct 61 TGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTC 120 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 | ||| || | ||| | ||||| || Sbjct 121 AGAGTCTTGACGAAGATCTGCATCTT 146 >seq4251 Length=3062 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | | Sbjct 1 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGC 60 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| ||| || | ||| | ||||| Sbjct 61 GTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192267219430238