Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5268 174 1e-38 seq757 161 8e-35 >seq5268 Length=2107 Score = 174 bits (192), Expect = 1e-38 Identities = 431/649 (66%), Gaps = 26/649 (4%) Strand=Plus/Plus Query 29596 GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTT 29654 ||| |||| ||| || ||||| | | |||| | | | | ||||||| | | || |||| Sbjct 52 GTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGAACCTTGAGGGGTT 110 Query 29655 CCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTA 29714 | || ||||| || || | |||||| || || | |||||| | || || |||| | Sbjct 111 CGACATGGTCCAGATAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCACCCGCCCGGA 170 Query 29715 GCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCA 29774 | || || || || || |||| ||| | ||| | |||||| |||||||| ||||||| Sbjct 171 GTCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGTTGAAGGGCA 230 Query 29775 CCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCA 29834 | |||||||||||||| |||| | ||| || | |||||||| ||||| ||||| | Sbjct 231 CGCCGAGCCCCATGTCGGCTGAGCGCTGATACATTTGGCACGATAGCTCACCGTCCGCGA 290 Query 29835 CGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG-TCTTTG 29890 |||||||||| | ||||| ||||| || || || ||||| | ||| || Sbjct 291 CGTAAAACTGGCAGAACATG---TGGCAGGGGGGCAGTGCCAT-CTCCTTAAGATCGGCC 346 Query 29891 GGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTC-----CTGATGAGGT 29945 |||||||| || ||| ||| ||||| | ||| | || || || || |||| Sbjct 347 GGGTTCCATGCTGACATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGCTTATGA--A 404 Query 29946 CCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNN 30004 ||| | ||| ||||| || || ||| || | |||||| | Sbjct 405 TCAC----CTCTGCAAGCTGGTCGACGCCCTGGCCGGTGTAGTCGGCGTGCATCGTCGTG 460 Query 30005 NNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30064 |||| || | ||||||||| |||||||||||||| |||||||| |||| Sbjct 461 TACTTTGCGCCGAAGTGGCGCCACTGGAAACCGTACACCGGTCCGAGGTCTCCGGCTTCA 520 Query 30065 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30124 | || ||| || | | || | | | || | || || ||| | |||||||| || Sbjct 521 CGATGACCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTG 580 Query 30125 ACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30182 | ||||| || | || | || |||| ||| ||| || |||| |||||||| ||||| Sbjct 581 ATGCCCTTGTCCTGCAG-GGTC-TTGGCGTTGGTGTCACCACTGATGAACCACAACAGCT 638 Query 30183 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 |||| | ||| | ||| || || | |||||||| || || ||||| Sbjct 639 CCTCTGCAACGCCGCGCCAGAACACGCGTTTGGTCGTTAGAAGTGGAAA 687 >seq757 Length=19743 Score = 161 bits (178), Expect = 8e-35 Identities = 463/713 (65%), Gaps = 19/713 (3%) Strand=Plus/Minus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589 ||| || | |||||| ||||| |||||| || | ||| ||||| | || | | Sbjct 19563 GTGCGGCTTGTAGCCTTCCAGATCGAAATCTTCAAACACAAAATCGTCGATACTGTGCGT 19504 Query 29590 CCTCCT---GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCC 29645 | || ||| |||| ||| || ||||| | | |||| | | | | ||||| | | Sbjct 19503 CTTCTCAGGGTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGGACCT 19445 Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 | || || || || || || ||||| | |||||| || || | |||||| | || || | Sbjct 19444 TGAGGGGCTCGACATGATCCAGGTAAATGTGAGCGTCGCCAATGGTGTGAATGAAGTCAC 19385 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 ||| ||||| || || || || |||| ||| | ||| | |||||| ||||||| Sbjct 19384 CCGCCCGCAGCCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGCGCGTAGCTCGCGATGT 19325 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC 29825 | |||||||| ||||| |||||||| |||| | ||| || | |||||| || ||||| | Sbjct 19324 TGAAGGGCACACCGAGACCCATGTCGGCTGAGCGCTGATACATCTGGCAAGACAGCTCAC 19265 Query 29826 CGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCA 29882 |||| ||||||||||| | ||||| || || || || || ||||| | Sbjct 19264 CGTCCGCGACGTAAAACTGGCAGAACATG---TGACAGGGGGGCAGTGCCATCTCCTTGA 19208 Query 29883 AGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA--- 29939 || |||||||| || ||| ||| ||||| | ||| | || || || | | Sbjct 19207 GATCGGCCGGGTTCCATGCTGACATGATTATGCGACGGTCGTTCGGATTCGTCTTCAGTT 19148 Query 29940 TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 |||| ||| || || ||||| || || ||| |||| |||||| | Sbjct 19147 TGAGAATCACCTCG----GCAAGCTGGTCGACGCCCTGACCCGTGTAGTCGGCGTGCATC 19092 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 |||| || | ||||||||| |||||||||||||| |||||||| Sbjct 19091 GTCGTGTACTTTGCGCCGAAGTGGCGCCACTGGAAGCCGTACACCGGTCCGAGGTCTCCG 19032 Query 30059 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30118 |||| | || ||| || | | || | | | || | || || ||| | |||||| Sbjct 19031 GCTTCACGATGACCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAG 18972 Query 30119 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30178 || || | ||||| || ||| |||| ||| ||| || |||| |||||||| | Sbjct 18971 ATTTTGATGCCCTTGTCCTGCAGCGTCTTGGCGTTGGTGTCACCACTGATGAACCACAAC 18912 Query 30179 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 || ||||| | || | ||| || || | |||||||| || || ||||| Sbjct 18911 AGTTCCTCTGCAACACCGCGCCAGAACACGCGTTTGGTCGTAAGAAGTGGAAA 18859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406077676880422