Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq18 136 6e-27 >seq18 Length=85926 Score = 136 bits (150), Expect = 6e-27 Identities = 398/606 (66%), Gaps = 19/606 (3%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || || ||||| ||||| | || | ||| || || || |||| Sbjct 69263 CACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGTTCATTCGAGAAGCTGAGG 69204 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || |||||||| ||||||||||| || | ||| |||||||| ||||| Sbjct 69203 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAGCAGAAGGATCCAGAGAAGAAG 69144 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCATTATGAA 46807 || || || || ||||| || ||||||| | ||||| || | || | | || Sbjct 69143 ATACCCTCGACGGCCGCAAAGGCGACAA--TGCGCTCCGCAAACGCCGCGCGACGA-GAG 69087 Query 46808 T----CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | |||| | ||||||| | ||||| |||| |||||||| || || || || || Sbjct 69086 TCGCACCACTTCAGAGCCCAGTGGGCCTTCTTCTGCACACAAGGAATGGTCTCAATCGC- 69028 Query 46864 TTAAAGAGAAAGtttttttCATCACT---ATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||||| || || | || | || || | || || || || | || Sbjct 69027 --GCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATGAGCAGCGAG 68970 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||| || || || ||||| || || || ||||| || ||||| || || | ||| ||| Sbjct 68969 TACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCA 68910 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCAC 47038 | | ||| ||||| | | || ||||| | | || || || || || || |||| Sbjct 68909 GGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTTTCGTTGACAATGCCGTCAC 68852 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT 47098 | || |||||||| || | ||||| || || ||||| |||| | || || || | Sbjct 68851 TGGCGGCAAAAAACGCGAGCACATGCTTGATGAAATAGCGCTCATTGTCCGTGAGGTTGT 68792 Query 47099 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTG 47158 ||||||| |||| || | | ||| | || || || |||||||| |||||| | Sbjct 68791 TCCAGTCCTTGAGGTCGTGCACCAGATCAATCTCCTCGGCCGTCCAGAAGCTCGCCTCGG 68732 Query 47159 CTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTG 47218 | || || ||||| | ||| | || | || |||||||| | ||| || | || | Sbjct 68731 CCTTCTTGTACATCTGCCACACCTCGTTCTCCTGAATCGGAAAGAGAACGAAGCGGTTGG 68672 Query 47219 GATTTT 47224 | |||| Sbjct 68671 GGTTTT 68666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712780432904640