Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq30 140 7e-28 seq26 122 2e-22 seq14351 118 2e-21 seq7289 109 1e-18 seq7513 105 1e-17 seq5206 104 5e-17 seq5262 98.7 2e-15 seq1843 89.7 1e-12 seq4251 87.8 4e-12 seq1872 87.8 4e-12 seq1170 84.2 5e-11 >seq30 Length=72463 Score = 140 bits (154), Expect = 7e-28 Identities = 206/290 (71%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 |||| |||||| ||||| | | ||||| ||||||||||||||| |||| || || Sbjct 62573 CAGTAGCGTGAAGATGTAACGTGGGCTCGCGGCGTCCTTGCCACCTTGTAGCCGCGTGCC 62632 Query 273833 AAACTGACCCTCGGGC---AGTAGC--CAGTTTATGTTGTTGCTACCGACGTAATCCTGA 273887 |||||| ||| || || ||| ||| ||||||| ||||| || ||||| Sbjct 62633 AAACTGGCCCGACGGATAGAGGAGCGGCAG-----GTTGTTGGCGCCGACATAGTCCTGC 62687 Query 273888 GCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCG 273947 ||||| || ||||| ||| || || || |||||||||||||||| || |||| ||| Sbjct 62688 GCCATGTTGACGATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGATACGCCGTGTGCTCG 62747 Query 273948 GCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCG 274007 | ||||| | ||| || ||||| || || |||||| || ||||||| Sbjct 62748 CTGCAGTAACCCGCCAGCTGCGCTACCTTGACTTCCTTCGTCAGCTTGCGCTTGAGGCAC 62807 Query 274008 GAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 | | |||| ||||||||||||||| ||||| |||||| ||||| || || Sbjct 62808 GCAAACAAAACCTTCCGCTGCGAGACCTTGAGCCCATCGACGACGGAGGG 62857 >seq26 Length=77529 Score = 122 bits (134), Expect = 2e-22 Identities = 572/893 (64%), Gaps = 34/893 (4%) Strand=Plus/Minus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| ||||| | ||| | ||| | ||||| |||||||| | ||| | ||| || Sbjct 8541 CTTCCCGATTCAGGAGAACGAAGTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTG 8482 Query 229595 GACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACG 229653 ||| | || || || || |||| ||| || |||||| | || |||| | Sbjct 8481 GACTGCCGAAGAGATCGATCTTG-TGCACGACCTCAAGGACTGGAAC---AACCTCACGG 8426 Query 229654 ACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCG 229713 || | || ||| | |||||||||||| | |||| ||| ||||| | ||||| || | Sbjct 8425 ACAACGAGCGCTACTTCATCAAGCACGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTG 8366 Query 229714 TGATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGT 229773 | | || ||| | | ||||||||| ||| || |||||| ||||| || | Sbjct 8365 TCAACGAGAACCTCGCCATGAACTTCAGCAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCT 8306 Query 229774 TTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTG 229833 | |||| | ||||| || || | || || || |||| | || || |||| Sbjct 8305 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGGTGTATTCGCTGCTCATTG 8246 Query 229834 ACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCC 229893 || || ||| ||| || ||| | | || || ||| || || | ||||| Sbjct 8245 ACACGTACATCAAGGACCAGACGGAGAAGAACCACCTTCTCCGCGCGATTGAGACCATCC 8186 Query 229894 CGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACC---CAGTAAATCGT 229950 | || || || || || | ||||||| |||||| || | | | ||| Sbjct 8185 CTTGCGTGCAGAAGAAGGCCCACTGGGCTCTCAAGTGGTGCGACTCGCGCCGCGCGGCGT 8126 Query 229951 TTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGAGTTTCT 230010 |||| ||||| | ||||| | | | ||| ||||| || | ||||| || |||| Sbjct 8125 TTGCGGAGCGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCT 8066 Query 230011 GCGCCATCTTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACG 230067 || | ||||| ||||| ||| ||| ||| |||||||||| ||| | | ||||||| Sbjct 8065 GCTCGATCTTCTGGCT---CAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACG 8009 Query 230068 AATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTCGAAG 230126 | ||||| | || || || || ||| || | || ||| | | |||| |||||| Sbjct 8008 AGCTCATCTCGCGTGATGAGGGCCTCCACT-GCGACTTCGCGTGCCTGCTGTACTCGAAG 7950 Query 230127 CTAAATAACAAACTACCTTTCGAAACGGTGAAACAA---ATCGTCACAGAAGTAGTTGCA 230183 || ||||| || || ||| || | || ||| || || | || | Sbjct 7949 CTCGCCAACAAGCTTCC---CGAGTCGCGCATCCACGAGATCATCCGTGACGCCGTCTCG 7893 Query 230184 AATGAAAAGGAGTTCATTTGCGACGCTATTCC--TTGCCGTCTTATCGGCATGAATGCTG 230241 | ||| ||||||||| | ||| | | || ||| |||||||||||||| | Sbjct 7892 ATTGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTTGAG--CTTATCGGCATGAACTCGT 7835 Query 230242 ATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG---GT 230298 |||||| | || || ||||| ||| || || ||| || || ||||| || || Sbjct 7834 CCCTCATGTGCCAGTACATCGAGTTCTGTGCGGACCGTCTTCTCCACGCGCTTGGCGTGT 7775 Query 230299 ACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGG 230358 | ||| | || || | |||||| |||| || ||||| | || || ||||||| Sbjct 7774 CCAAGA---TCTACAAGGTCTCGAACCCGTTCGATTGGATGGACATGATCTCGCTCCAGG 7718 Query 230359 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGCCCGGTGT 230410 | || || ||||||||||| |||||||| |||| || || |||| ||||||| Sbjct 7717 GAAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGG-CCGGTGT 7666 >seq14351 Length=379 Score = 118 bits (130), Expect = 2e-21 Identities = 117/150 (78%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 215 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 274 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || || || || Sbjct 275 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 334 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTT 283020 || ||||||||||| |||||||| ||||| Sbjct 335 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 364 >seq7289 Length=1152 Score = 109 bits (120), Expect = 1e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT- 283015 || ||||| ||||||| || || || || || || ||||||||||| |||||||| Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || | || || ||||||||| ||||| ||||| ||||||||||| || || Sbjct 1092 TGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 1034 Query 283076 CAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||| ||||| |||||||| || Sbjct 1033 CAGAGTCTTGACGAAGATCTGCATCTT 1007 >seq7513 Length=1086 Score = 105 bits (116), Expect = 1e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT- 283015 || ||||| ||||||| || || || || || || ||||||||||| |||||||| Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| || || | || || | ||||||| ||||| ||||| ||||||||||| || || Sbjct 61 TGC-TTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 119 Query 283076 CAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||| ||||| |||||||| || Sbjct 120 CAGAGTCTTGACGAAGATCTGCATCTT 146 >seq5206 Length=2145 Score = 104 bits (114), Expect = 5e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 |||| | || ||||| ||||| || ||||||| ||||||||||| |||| || | Sbjct 1529 CAAGCAACTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGA 1470 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 |||| | || ||||| ||||||||||| |||||||| || ||||| || | |||||| Sbjct 1469 TGTCCAAGTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGG 1410 Query 316274 TTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGA 316333 || |||||||| || ||||| ||| | || | | || || | || || || | Sbjct 1409 CCGGGTGCTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAA 1350 Query 316334 GAGTACTTTTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGA 316388 | || || || || ||||| ||| || ||| |||| | ||| |||||| Sbjct 1349 GCGTCGACTTGCCGGCACCGTTGGGACCGACAACAGCGATACGCGAGGCGAGCGA 1295 >seq5262 Length=2108 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| || || || | Sbjct 625 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATATCCAAG 684 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| ||||||||||| |||||||| || ||||| || | |||||| || ||| Sbjct 685 TGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTGC 744 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| ||| | || | | || || | || || || ||||| Sbjct 745 TTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGAGTCGAC 804 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGA 316388 || || || ||||| || || ||| |||| | ||| |||||| Sbjct 805 TTGCCGGCACCGTTGGGGCCAACAACAGCGATACGCGAGGCGAGCGA 851 >seq1843 Length=9525 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 3033 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 3092 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||||||||||||||| || || || || || ||||||| || || || || Sbjct 3093 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATC 3146 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| |||||||| || || | || || |||| || | ||||| | Sbjct 3230 TACCCTCCTTGTCCTGGATCTTGTTCTTGACATTGTCAATGCTGTCGGACGGCTCGACGT 3289 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 3290 CCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 3339 >seq4251 Length=3062 Score = 87.8 bits (96), Expect = 4e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 282999 TCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAG 283057 |||||||| || ||||| ||||| ||| | ||||| | |||||| | || || || || Sbjct 1 TCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 59 Query 283058 AGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||||| |||||| ||||| |||||||| Sbjct 60 CGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 101 >seq1872 Length=9383 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 9259 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 9318 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||| || ||||| || || || ||||||||||||| || || ||||| Sbjct 9319 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 9371 >seq1170 Length=14133 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| | Sbjct 11130 ACCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 11071 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||||||||| || || || ||||| ||||||| || || || || Sbjct 11070 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 11017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046507492175158