Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14351 107 1e-18 seq7289 89.7 4e-13 seq1872 87.8 1e-12 seq7513 86.0 5e-12 >seq14351 Length=379 Score = 107 bits (118), Expect = 1e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || | ||| ||| |||| || Sbjct 233 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 292 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||||| | ||| | || ||||| ||| Sbjct 293 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTG 352 Query 44248 TATCTTCTGCTT 44259 ||||||||||| Sbjct 353 GATCTTCTGCTT 364 >seq7289 Length=1152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || ||||| ||||||| ||||||||||| | ||| | || ||||| ||| |||||| Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 44255 TGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| || ||| | ||| |||| | | || || || | ||| |||||||| || | Sbjct 1092 TGCTTGACATTGT--CAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGG 1035 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| |||||||| ||||| Sbjct 1034 TCAGAGTCTTGACGAAGATCTGCAT 1010 >seq1872 Length=9383 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || | Sbjct 9259 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 9318 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| || |||||||| ||||||||||||| |||||||| || Sbjct 9319 AGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 9371 >seq7513 Length=1086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || ||||| ||||||| ||||||||||| | ||| | || ||||| ||| |||||| Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 44255 TGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 ||||| || ||| | ||| | || | | || || || | ||| |||||||| || | Sbjct 61 TGCTTGACATTGT--CAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGG 118 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| |||||||| ||||| Sbjct 119 TCAGAGTCTTGACGAAGATCTGCAT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359914599183909