Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7289 114 3e-20 seq7513 109 1e-18 seq14351 102 2e-16 seq1170 87.8 4e-12 >seq7289 Length=1152 Score = 114 bits (126), Expect = 3e-20 Identities = 118/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 1002 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 1058 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || |||| ||| || || ||||| || ||||| |||||||| || || |||| Sbjct 1059 TCGAGCCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCC 1118 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||||| ||||| || || ||||||||||| || Sbjct 1119 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAA 1152 >seq7513 Length=1086 Score = 109 bits (120), Expect = 1e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 151 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 95 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || || | ||| || || ||||| || ||||| |||||||| || || |||| Sbjct 94 TCGAGCCTTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCC 35 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||||| ||||| || || ||||||||||| || Sbjct 34 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAA 1 >seq14351 Length=379 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||| || || ||||| || ||||| |||||||| || || ||||||||||| ||||| || Sbjct 377 CATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCG 318 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 || ||||||||||| || |||||||| || || | || || | || || ||| |||| Sbjct 317 CCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCA 258 Query 178106 AAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || Sbjct 257 GAAGGAGTCGACGCTCCACCTGGT 234 >seq1170 Length=14133 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| |||||||| ||||| || || ||||||||||| || |||||||| ||||| | Sbjct 11004 AGGAATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCG 11063 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || || ||| |||| || || || || ||||| || || Sbjct 11064 CACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTCGT 11111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203464740180738