Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14351 134 1e-26 seq1872 122 8e-23 seq1843 107 2e-18 seq1170 107 2e-18 seq7289 87.8 2e-12 seq7513 82.4 7e-11 >seq14351 Length=379 Score = 134 bits (148), Expect = 1e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || ||||| ||||||||| ||||| ||||| ||| Sbjct 216 CCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 275 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| ||||||||||| || |||| || Sbjct 276 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 335 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || |||||||||| ||| || ||||| Sbjct 336 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 364 >seq1872 Length=9383 Score = 122 bits (134), Expect = 8e-23 Identities = 101/122 (83%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| ||||||||| ||||| ||||| || Sbjct 9258 GCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 9317 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753 || ||||| |||| || |||||||||||||| || ||||||||||| |||||| |||| Sbjct 9318 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 9377 Query 41754 GA 41755 || Sbjct 9378 GA 9379 >seq1843 Length=9525 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || |||||||| ||||||||| ||||| ||||| Sbjct 3031 CCACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 3090 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||| ||||| | || |||||||||||||| ||||| ||||||||||| || |||| Sbjct 3091 GAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGA 3150 Query 41753 GGAA 41756 |||| Sbjct 3151 GGAA 3154 >seq1170 Length=14133 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || ||||| || ||||||||| ||||| ||||| Sbjct 11132 CCACCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 11073 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||| ||||| | || |||||||||||||||||||| ||||||||||| || |||| Sbjct 11072 GAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 11013 Query 41753 GGAA 41756 |||| Sbjct 11012 GGAA 11009 >seq7289 Length=1152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||||||||| ||||||||||| || |||| || | || |||||||||| ||| || Sbjct 1152 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 1093 Query 41780 TGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 ||||| || | || | |||| | ||| || || | ||| ||||| || || || Sbjct 1092 TGCTT-GACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 1034 Query 41839 CAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| ||||| ||||| |||||||| || Sbjct 1033 CAGAGTCTTGACGAAGATCTGCATCTT 1007 >seq7513 Length=1086 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||||||||| ||||||||||| || |||| || | || |||||||||| ||| || Sbjct 1 TTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 60 Query 41780 TGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 ||||| || | || | | || | ||| || || | ||| ||||| || || || Sbjct 61 TGCTT-GACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGT 119 Query 41839 CAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| ||||| ||||| |||||||| || Sbjct 120 CAGAGTCTTGACGAAGATCTGCATCTT 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462204159672400