Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq81 244 2e-59 seq3295 239 1e-57 seq3341 98.7 2e-15 seq2550 89.7 1e-12 >seq81 Length=54637 Score = 244 bits (270), Expect = 2e-59 Identities = 669/1008 (66%), Gaps = 34/1008 (3%) Strand=Plus/Plus Query 248738 TCGCCGATGACGT---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGA 248794 ||||||| ||||| ||| | | |||| || |||| | ||| | || || |||| Sbjct 8280 TCGCCGAGGACGTGTACCAGATCATCATGGAGCACAAGG---ACCGCTTGAACTCGGCGA 8336 Query 248795 TTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGT 248854 | | ||| | ||||| |||||||| | ||||| ||||| ||||| ||||| |||| Sbjct 8337 TCATCCACGACCGCGATTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGT 8396 Query 248855 ATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGG 248914 | || || | | |||||| ||| ||| || ||||| ||| | | || || | Sbjct 8397 ACCTGCTGCGCGTCGGCGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCG 8456 Query 248915 CTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTG 248974 ||||||| || |||||| | ||||| || || ||||||||||||| ||| Sbjct 8457 CTGTCGGCATCCACAAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGC 8516 Query 248975 AACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGC 249034 || ||| | || || || || |||||||| || ||||| || || | |||| Sbjct 8517 AAAGCTTCTTCACGCACGCGACGCCGACGCTGTTTAACGCTGGCACGCCGCGCCCGCAGC 8576 Query 249035 TGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGC 249094 || || ||||| || || |||||| | |||||||| |||| ||||| || ||||||| Sbjct 8577 TGTCGTCTTGCTTCCTGCTGGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGC 8636 Query 249095 TTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACA 249154 | || ||| || || || || | || ||||| |||||| | ||| ||||| Sbjct 8637 TCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACA 8696 Query 249155 TCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCC 249213 |||| || | ||||||||| || || || || || | | || |||| || Sbjct 8697 TCCGCGCCACCAACTCGTACATCCGCGGCACGAA-CGGCTCGTCGAACGGCCTCGTGCCG 8755 Query 249214 CTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAG 249270 | || || || | ||| || | | | | |||||| ||| || || ||| Sbjct 8756 ATGCTCCGCGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAG 8815 Query 249271 GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTG 249330 || |||||||||||||| | || ||||||||| || || || |||||||| ||| | Sbjct 8816 GGCTCGTTCGCCATGTACCTCGAGCCGTGGCACGCGGACATCTTCGAGTTCCTCGACCTC 8875 Query 249331 AAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTC 249390 || |||||| |||| ||||||||| | || || || || ||||||| | ||||| || Sbjct 8876 AAGAAGAACCACGGAAACGAGCTCCATCGTGCTCGCGATCTGTTCTACGCCATGTGGATC 8935 Query 249391 TCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTC 249449 | || | |||||| |||||| ||||| ||||||| |||| || |||| | ||| Sbjct 8936 CCGGATCTCTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGA-GCCTCTTCTGCCCGAA 8994 Query 249450 CGACGCCCCGGACCTC--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AG 249504 ||| ||||||| ||| ||| | |||| ||| |||| | || || || | Sbjct 8995 CGAGGCCCCGGGGCTCTACACGACGT--GGGGCGACGAGTTCG---AGGCGCTGTACCAC 9049 Query 249505 AAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCG 249558 | ||||| | ||| || ||||||| ||| || | | || || ||| Sbjct 9050 CAGTACGAGAAGGAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCG 9109 Query 249559 AAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGC 249618 | | | ||||| ||||| ||||| || |||||| ||| ||| ||| ||||| Sbjct 9110 A---TCCTCGAGTCTCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGC 9166 Query 249619 AACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGA 249677 ||| |||| ||||| | | | || || || ||||||||| || || || ||| || Sbjct 9167 AACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGC-GA 9225 Query 249678 GGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | | ||| |||| ||| ||| | ||||| |||||||| || Sbjct 9226 GGTGCTCGAGTACACGTCGCCGGACGAGGTCGCCGTGTGCAACCTCGC 9273 >seq3295 Length=2747 Score = 239 bits (264), Expect = 1e-57 Identities = 441/642 (69%), Gaps = 16/642 (2%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || ||||| | ||||| ||||| ||||| ||||| |||||||| || | Sbjct 1921 GATTTTGACTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTGCTGCGCGTC 1862 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| ||| ||| || ||||| ||| | | || || |||||||| || ||| Sbjct 1861 GGTGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCAC 1802 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| | ||||| || || ||||||||||||| ||| || ||| | || Sbjct 1801 AAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 1742 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGTG 249044 || || || |||||||| || ||||| || || |||| |||||| || || Sbjct 1741 CACGCGACGCCGACGCTGTTTAACGCGGGCACGCCGCGTC----CGCAGCTGTCGTCTTG 1686 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| || ||||||||| | |||||||| |||| ||||| || |||||||| || ||| Sbjct 1685 CTTCCTGCTTGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTG 1626 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || || || || | || ||||| |||||| | ||| |||||| || || | Sbjct 1625 CGCTTGCATCTCGAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCAC 1566 Query 249165 GGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCGA 249222 ||||||||| || || || || |||| | || |||| || | || || Sbjct 1565 CAACTCGTACATCCGCGGCACGAACGGCTCGTCA--AACGGCCTCGTGCCGATGCTCCGC 1508 Query 249223 TGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTC 249279 ||| | ||| || | | | | |||||| || || |||||||| |||||| Sbjct 1507 GTGTTTAACGACACGGCGCGCTACGTGGACCAGGGTGGCGGCAAGCGAAAGGGCTCGTTC 1448 Query 249280 GCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAAC 249339 || ||||| | ||| ||||||||| ||||| || |||||||| ||| | || |||||| Sbjct 1447 GCGATGTACCTCGAACCGTGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGAAGAAC 1388 Query 249340 AACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTG 249399 |||| ||||||||| | || ||||| || ||||||| | ||||| || | || | Sbjct 1387 CACGGTAACGAGCTCCATCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTC 1328 Query 249400 TTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT 249441 |||||| || ||| ||||| ||||||| |||| || |||| Sbjct 1327 TTCATGAAGCGAGTCGAGGCCAACGGCGAGTGGA-GCCTCTT 1287 >seq3341 Length=2704 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || |||||||||||||||||||| Sbjct 2371 ACACCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTTCCCTGGAGC 2312 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT 157350 || |||||||||||||| ||||| ||||| | | ||||| | ||| Sbjct 2311 GAGATCATGTCCATCCAATCGAACGGGTTCGAGACCTTGTAGATCTT 2265 >seq2550 Length=3730 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 || || |||||| || | | || || ||||| ||| | ||||| | |||||| ||||| Sbjct 1636 CCACCGTTCAAGATCATCGTGCTCGATGAGGCCGACTCGATGACAGGCGACGCACAGTCG 1695 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 || || || || | |||||| | ||||| || ||||| || ||||| | || || Sbjct 1696 GCGCTGCGTCGCATGATGGAAAACTACTCCAAGGTCACGCGCTTCTGCCTCATTTGTAAT 1755 Query 254325 TACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||| | |||| |||||| || | ||||| || |||||||||||||| || Sbjct 1756 TACGTCAGCCGAA--TCATCGAGCCAATCGCTTCGCGCTGCGCCAAGTTTCGTTT 1808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073557930602304