Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3341 167 3e-36 seq3295 91.5 2e-13 >seq3341 Length=2704 Score = 167 bits (184), Expect = 3e-36 Identities = 380/565 (67%), Gaps = 15/565 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || ||||| |||||||| || ||||| || | || || ||||| || | Sbjct 2079 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 2020 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | |||| |||||||| ||||||||||| |||||||| || || || ||| || || | Sbjct 2019 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCG 1960 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC------TGG 50125 | |||||||| || || || || || ||||| |||| | ||| || ||| || Sbjct 1959 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCGG 1901 Query 50126 CGC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 ||| ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 1900 CGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTC 1844 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || || || | || | ||| || || | || || | || || || || | Sbjct 1843 TCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATAAGC 1784 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 || ||||| || || || ||||| || ||||| ||||| || |||||||| || | Sbjct 1783 AGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGC 1724 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTC 50362 ||||| | | |||||| || | | || ||||| || | || || || || || | Sbjct 1723 GCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATGC 1666 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 |||||||||| ||||| ||||| | || || || || || | |||||| || | Sbjct 1665 CGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGA 1606 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | || ||||| || |||| || | | ||| | ||||| | ||||| || | Sbjct 1605 GGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCGGTCCAGAAGCTCG 1546 Query 50483 CCTCTGCCTTTTTATACATATTCCA 50507 |||| ||||| || ||||| | ||| Sbjct 1545 CCTCGGCCTTCTTGTACATCTGCCA 1521 >seq3295 Length=2747 Score = 91.5 bits (100), Expect = 2e-13 Identities = 413/652 (63%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 |||||| || | ||| ||||| ||||| |||||||| || ||||| | || || Sbjct 1295 CCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAA 1354 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | || | ||| |||||| || ||||| || || ||||||||| | | Sbjct 1355 CAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAA 1414 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||||| | ||||||||||| | ||| || || | ||| ||| ||| || || Sbjct 1415 GATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACC 1474 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||| || | ||| | || |||| ||| | || | | ||| || | | || || || Sbjct 1475 CTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGTTTGA 1534 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 80219 | || || || ||| ||| || |||||||||| || | | ||| Sbjct 1535 CGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACC 1594 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 || || || ||| || ||||| | ||||| | || | ||| || ||||||||||| Sbjct 1595 GATGCCGCCGGCCCACTTCGAGATGCAAGCGCACTGCTTCAGCGTGTCGTAGATGCCCTC 1654 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || || || ||||| ||| || || || |||| || |||| || || Sbjct 1655 GATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCC 1714 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACG 80398 ||| ||||| | || || | |||||||| || | ||| |||| ||| | ||||| Sbjct 1715 CGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA-CTCGTACG 1773 Query 80399 TCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 |||| | || | || || || | || || || || ||||| || | | ||| | Sbjct 1774 TCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCT 1833 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 |||| || | || ||| |||| | | || || || || || || | || | Sbjct 1834 GCTGCGGGCGCTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCT 1893 Query 80519 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 | || ||||| |||| ||| ||| || || |||| || || |||| || Sbjct 1894 TGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTGGATGATCGCCGAATT 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718132750910920